Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00181 ATGGCTGTCTGTACATTAAACTCATCCTTCCTGGGCTTCCACCAGAAGAGCCACCAGCCACCGCAGCAGCCGCCGCAGCAGCTGGTTTTCTTGAGTGGAAAGAGGTGGGGGAGCAGCAAAAGGGAGAGACACAGCAGCTTGAGCAACACCGCCTGTGTCATAACCTGCTCAGCTGGTGGCCAGCAGACAGTGGTGATCGGTCTAGCAGCTGACTCAGGGTGTGGGAAAAGCACATTCATGAGGAGGCTAACAAGCGTTTTTGGAGGGGCAGCTGAGCCACCAAAGGGCGGCAATCCAGACTCAAACACACTCATCAGTGACACAACCACCGTGATATGCTTAGATGACTACCACTCATTAGACAGAACAGGAAGAAAAGAAAAGGGAGTCACAGCGCTTGATCCAAAAGCCAATGATTTTGACCTCATGTATGAACAAGTTAAGGCTCTTAAAAATGGTGTCCCTGTTGATAAGCCCATTTATAATCATGTCAGTGGCCTTCTTGACCCTCCTGAGCTCATTAAGCCGCCTAAAATCCTTGTCATTGAAGGCTTACACCCCATGTATGATTCAAGAGTAAGAGACCTGCTGGACTTCAGTATCTACTTGGATATCAGCAATGAAGTTAAATTTGCTTGGAAAATTCAGAGGGACATGGCTGAGAGAGGACACAGCCTCGAGAGCATCAAAGCAAGTATCGAAGCTCGAAAACCCGACTTTGATGCCTATATTGACCCACAGAAGCAGTATGCAGATGCAGTGATAGAAGTGCTACCAACAAATCTGATTCCAGATGATAATGAAGGGAAAGTTCTGAGAGTTAGGCTGATAATGAAGGAAGGGGTTGAGTTTTTTAACCCAGTTTATTTGTTTGATGAAGGCTCCACAGTTTCATGGATACCTTGTGGAAGAAAGCTCACTTGTTCTTACCCTGGCATCAAGTTCTCCTATGGCCCTGAATCTTACTATGGCCATGAGGTATCCGTACTGGAAATGGACGGGCAGTTCGACAGACTGGACGAACTGATCTATGTGGAAAGCCATCTAAGCAACTTGTCGACAAAATTCTACGGCGAAGTGACTCAACAGATGCTGAAGCACTCGGAGTTCCCCGGAAGCAACAACGGCACGGGATTCTTCCAAACCGTCGTCGGATTGAAGATCAGAGATCTGTACGAGCAGATTTCCGCCAGCAGGGCCAAGGTGCCGGTGGAGGCCGCAAAAGCCTGA 1230 48.21 MAVCTLNSSFLGFHQKSHQPPQQPPQQLVFLSGKRWGSSKRERHSSLSNTACVITCSAGGQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKALKNGVPVDKPIYNHVSGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTNLIPDDNEGKVLRVRLIMKEGVEFFNPVYLFDEGSTVSWIPCGRKLTCSYPGIKFSYGPESYYGHEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHSEFPGSNNGTGFFQTVVGLKIRDLYEQISASRAKVPVEAAKA 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1480746 1484326 - Cp4.1LG15g01750.1 Cpe15g00181 481639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00181 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 334 IPR027417 -
Cpe15g00181 409 CDD PRK 65 354 - -
Cpe15g00181 409 PRINTS Phosphoribulokinase family signature 70 87 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cpe15g00181 409 PRINTS Phosphoribulokinase family signature 179 197 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cpe15g00181 409 PRINTS Phosphoribulokinase family signature 214 231 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cpe15g00181 409 PRINTS Phosphoribulokinase family signature 232 255 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cpe15g00181 409 Pfam Phosphoribulokinase / Uridine kinase family 65 263 IPR006083 GO:0005524|GO:0016301
Cpe15g00181 409 PANTHER PHOSPHORIBULOKINASE 26 409 - -
Cpe15g00181 409 ProSitePatterns Phosphoribulokinase signature. 214 227 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cpe15g00181 409 Gene3D - 60 298 IPR027417 -
Cpe15g00181 409 PANTHER URIDINE KINASE 26 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00181 K00855 PRK, prkB; phosphoribulokinase [EC:2.7.1.19] - csv:101220055 725.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00149 Cpe15g00181 CCT
Cpe05g00149 Cpe15g00181 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00181 Cpe-Chr15:1480746 Cpe06g00842 Cpe-Chr6:5415010 4.22E-16 dispersed
Cpe14g00993 Cpe-Chr14:8371986 Cpe15g00181 Cpe-Chr15:1480746 1.89E-175 wgd
Cpe15g00181 Cpe-Chr15:1480746 Cpe05g00149 Cpe-Chr5:778357 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g779 . . . . . . Bma07g00905 . . Cmo16g01248 Cma02g01644 . Car02g01402 . . . Cpe05g00149 . . . . . . . . . . . . . . . . . . Lsi07g01150 . . Cme06g02430 Blo03g00891 . Bda07g00068 . . Bpe11g00307 . . Sed01g4150 Cmo02g01690 Cmo19g00223 . Cma16g01201 . Car16g01131 . Cpe15g00181 Bhi05g00425 Tan07g2037 Cmetu06g0105 Lac11g2460 Hepe06g0978 . Lcy12g1984 . . . . . . . . Csa03g00122 Chy06g02183 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002153 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00181 Cpe_Chr15 FPKM 23.806797 25.779463 26.859264 27.916401 23.615517 18.015272 23.690718 31.869198 32.906231 32.248295