Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00184 ATGATGGGGACATCAGTCCTTAACCACAACCATCATTTATTGCCCTCTAAAGACATACAACAAAGTTTAGATTTGAGTTTGAAGCAGAAGGAGCAGGAATGTTTGTGCCTTCTAAAGAAATGCAAGAGCTTAGAAGAATTCAAACAAGTTCATGTTCAAATTCTGAAGTTGGGTCTTTTCTGGGATTCTTTCTGCTCAAGCAGTCTTTTGAGCACTTGTGCGCTCTCAGATTGGAGCAGCATGGACTATGCCTGCTCCATTTTCCAACAGCTAGATGAACCTACCACATTTCATTTCAACACAATGATCAAAGGCTATGTTAACAACATGAACTTTGAGAGTGCTCTAAATCTGTATGCCGATATGTTTCAAAGAGAAGTAGAACCCGACAACTTCACGTACCCGGTAGTTCTCAAGGCTTGTGCTCGGTTAGCAGCGATCGAGGAAGGGATGCAGATTCATGGTCATGTATTCAAGCTAGGTTTGGAAGATGATCTATTTGTACAGAATAGCTTAATCAATATGTATGGGAAATGTGGGGATATCGAACTGTCTTGTGCTGTTTTTCGACGTATGGAGGAAAAGAGTGTGGCTTCTTGGAGTGCTATAATTTCAGCTCATGCTCGTGTTGGATTGTGGCGGGAATGTTTGATGTTGTTTGAGGATATGAGTACAGAAGGATGTTGGAGGGCTGAGGAAAGTATATTAGTCAGTGTGGTATGCTACCGCCCTGTATAA 738 41.73 MMGTSVLNHNHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLFWDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYADMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVVCYRPV 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1504820 1507430 + Cp4.1LG15g01850.1 Cpe15g00184 481642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00184 245 TIGRFAM PPR: pentatricopeptide repeat domain 199 228 IPR002885 -
Cpe15g00184 245 TIGRFAM PPR: pentatricopeptide repeat domain 168 197 IPR002885 -
Cpe15g00184 245 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Cpe15g00184 245 Gene3D Tetratricopeptide repeat domain 146 243 IPR011990 GO:0005515
Cpe15g00184 245 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 240 - -
Cpe15g00184 245 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 240 - -
Cpe15g00184 245 Pfam PPR repeat 199 228 IPR002885 -
Cpe15g00184 245 Pfam PPR repeat 170 196 IPR002885 -
Cpe15g00184 245 Pfam PPR repeat family 94 143 IPR002885 -
Cpe15g00184 245 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Cpe15g00184 245 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Cpe15g00184 245 Gene3D Tetratricopeptide repeat domain 32 144 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00184 - - - csv:101215176 381.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00291 Cpe-Chr7:1907469 Cpe15g00184 Cpe-Chr15:1504820 4.51E-22 dispersed
Cpe15g00184 Cpe-Chr15:1504820 Cpe18g00288 Cpe-Chr18:4436560 1.22E-43 dispersed
Cpe15g00694 Cpe-Chr15:7486347 Cpe15g00184 Cpe-Chr15:1504820 5.41E-29 dispersed
Cpe18g00871 Cpe-Chr18:7964884 Cpe15g00184 Cpe-Chr15:1504820 4.02E-27 dispersed
Cpe15g00184 Cpe-Chr15:1504820 Cpe19g00489 Cpe-Chr19:4227470 1.62E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0499 . . . . . Chy04g00133 . . . . Bda09g00761 Bpe08g00802 . . . . . Cmo19g00226 . . . . . Cpe15g00184 Bhi05g00432 . . . Hepe06g1808 . Lcy12g1981 Cla09g01083 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00184 Cpe_Chr15 FPKM 9.153668 10.394008 7.354727 7.689183 8.839151 9.443537 9.572263 8.384781 6.695473 7.671498