Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00191 ATGCGTATGGAGCTATTCCCAGCACAGCCAGATTTATCCCTCCAAATTAGCCCTCCAAATACCAATAAACCCTCTTCTTCTTGGATAACAACACCTTCTCAAGAAGAAGTTGATTTGAGGTTTTGGAATAATCTAAGTTTGGAGTCCACTAAATCCACTCCCAAACACCCCCCTCCACCTCCGCCTCCTAATCATCATCTTCATCGTCATCGTCATCATCATCATACCTCCGCTCCCCTTTTCGAAACCCTAAACAAAACCCGACACCGACCCGCCATTTTCCACCACGATACGACATCGCTTCTCAACCCGCCACCACCGCCTCCCCCGCTCCCGTTTCCAGGATTCTTGCAACCCATTAGAGGAATTCCGGTGTACCATCAAACAATTAACCCCTCCGGCATCGGTGTCGATGGTGGCCGAGGCGTTACTCCCTCTACCGTCGACCACCGCCAGATTATGATGCGGTCGAGGTTCTTGTCTAGGTTTCCAGCCAAACGAAGCATGAGAGCCCCACGGATGAGATGGACATCAACTCTTCATGCTCGCTTCGTTCATGCCGTCGAACTTCTCGGCGGCCACGAAAGAGCCACACCGAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACAGAACAGTGAAGACTACAGACAGAGCTGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGATATTCAAAAGCCAGCCATGGGAAGGCAAAATGAGAGCTTAGTTCATCAAACAACAAGGCAAAACCCTCTTCAAGACAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCAAACGATTCTTCTCGGGACCTTTCTTCGTCCCTCGAGAATGATACGGATCCGAAGTGCTCAAACAACGAGAGACTATCGGAAAGAAGCTCATCGTCAGATGATTGTGGAGGGACGAACTCTCATAAGCCAAATTTAGAATTCACATTAGGAAGGCCAATTTGA 1074 47.3 MRMELFPAQPDLSLQISPPNTNKPSSSWITTPSQEEVDLRFWNNLSLESTKSTPKHPPPPPPPNHHLHRHRHHHHTSAPLFETLNKTRHRPAIFHHDTTSLLNPPPPPPPLPFPGFLQPIRGIPVYHQTINPSGIGVDGGRGVTPSTVDHRQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNESLVHQTTRQNPLQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDTDPKCSNNERLSERSSSSDDCGGTNSHKPNLEFTLGRPI 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1569966 1575132 - Cp4.1LG15g01860.1 Cpe15g00191 481649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00191 357 MobiDBLite consensus disorder prediction 13 33 - -
Cpe15g00191 357 MobiDBLite consensus disorder prediction 313 334 - -
Cpe15g00191 357 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 356 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cpe15g00191 357 MobiDBLite consensus disorder prediction 48 77 - -
Cpe15g00191 357 Gene3D - 171 228 - -
Cpe15g00191 357 MobiDBLite consensus disorder prediction 335 349 - -
Cpe15g00191 357 MobiDBLite consensus disorder prediction 1 33 - -
Cpe15g00191 357 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 356 - -
Cpe15g00191 357 MobiDBLite consensus disorder prediction 307 357 - -
Cpe15g00191 357 SUPERFAMILY Homeodomain-like 169 225 IPR009057 -
Cpe15g00191 357 MobiDBLite consensus disorder prediction 62 76 - -
Cpe15g00191 357 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 172 225 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00191 - - - cpep:111811344 664.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00452 Cpe-Chr7:2891447 Cpe15g00191 Cpe-Chr15:1569966 7.05E-35 dispersed
Cpe09g01102 Cpe-Chr9:9507321 Cpe15g00191 Cpe-Chr15:1569966 2.37E-38 dispersed
Cpe11g00176 Cpe-Chr11:957338 Cpe15g00191 Cpe-Chr15:1569966 4.23E-35 dispersed
Cpe15g00191 Cpe-Chr15:1569966 Cpe20g00167 Cpe-Chr20:945976 4.80E-38 dispersed
Cpe01g01981 Cpe-Chr1:16933603 Cpe15g00191 Cpe-Chr15:1569966 9.23E-31 transposed
Cpe14g00982 Cpe-Chr14:8301898 Cpe15g00191 Cpe-Chr15:1569966 3.05E-08 wgd
Cpe15g00191 Cpe-Chr15:1569966 Cpe05g00160 Cpe-Chr5:852093 2.39E-146 wgd
Cpe15g00191 Cpe-Chr15:1569966 Cpe08g00875 Cpe-Chr8:6906942 2.30E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g717 . . . . . . . . Cmo06g00638 . Cma02g01632 . Car02g01391 . . . . . . . . . . . Cla10g00132 Cam10g0130 Cec10g0139 Cco10g0139 Clacu10g0135 Cmu10g0982 Cre10g0392 . . . . . . Chy04g00122 . . Blo19g00245 . . . . . . . Cmo02g01676 Cmo19g00231 Cma06g00631 . Car06g00565 . . Cpe15g00191 . . . . . . . . . . . . . . . . . Cme04g00145
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50593 None None None None Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00191 Cpe_Chr15 FPKM 12.726549 13.109956 13.090237 11.668441 14.313531 12.184353 15.925989 11.226659 12.400208 14.640948