Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00207 ATGGGGTCTTATGGCAGCCCTAAGACTTGGATACCTTATATGAGCAACAAAGATTGCTCTCAAGGTTTTTGTAGTGTATATTGTCCTCAATGGTGCTACATCATGTTGTCACCTCCACCACCCTTGGAGTTTCCTGATGATGATTCATCCCCAAATTTTTCACCTCTTGTTATAGCAATTATTGGAATTCTAGCAAGTGCTTTCCTTCTTTTAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTTTGGAACTGGAAATCATGACCCAAATGAGGAATTTGAAGATAATCATAACCCAACACTTCATGAACCATGGCATGTTGCCACAAATGGCTTGGATGAGGCAATGGTTAAGTCGATTACGATTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGTCTTAGTGAGTTTCAAGAAGATGATAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTATGTCGTGCTAATATCGTCTCTGTCGATGCTTCTCCTCCCGTTCACCTTCCTGCAAGCAATGCATATCCCATAACTAATGAGACCATGCCAGAGACTTCTCAGACACATGACCCTGAGGCTGTTTCACAAGATTCAGAACGAAGTTTCAGAAGTAATTGTGGGAAGAACTCAGTTCGTGCCTTCAGTGACCTCGGAGTACTGGAGAAAAGAGACACTGTCATTGAGCTTAGAGACGGCGAATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAATCATATCATTATTGCGGATGTTCTACGTCTAAACGACGACGAGTATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAATGTTCAGTGGGAGAAGACAGCAAGTCCAGCCACAGAAAAACAATCCTGCATTGTGTTATGAGTCCTGTTTCGATTAAGAGATCGTTTTCAAGTGGAAGATTTTCTCTCATTAGGCATGGAAAAGAACACAGGGAAATCGCCCGTGTCTGA 1068 42.23 MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHDPNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITICKYKRGDGLVEGSDCSVCLSEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPETSQTHDPEAVSQDSERSFRSNCGKNSVRAFSDLGVLEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSKSSHRKTILHCVMSPVSIKRSFSSGRFSLIRHGKEHREIARV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1711316 1712383 - Cp4.1LG15g02080.1 Cpe15g00207 481665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00207 355 MobiDBLite consensus disorder prediction 210 234 - -
Cpe15g00207 355 CDD RING-H2_PA-TM-RING 142 185 - -
Cpe15g00207 355 SUPERFAMILY RING/U-box 137 193 - -
Cpe15g00207 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Cpe15g00207 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 265 345 - -
Cpe15g00207 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 6 222 - -
Cpe15g00207 355 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Cpe15g00207 355 Pfam Ring finger domain 142 185 IPR001841 -
Cpe15g00207 355 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 265 345 IPR044675 -
Cpe15g00207 355 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 222 IPR044675 -
Cpe15g00207 355 SMART ring_2 143 184 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00207 - - - cmo:103503554 630.943
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00173 Cpe15g00207 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01624 Cpe-Chr3:12462548 Cpe15g00207 Cpe-Chr15:1711316 1.08E-84 dispersed
Cpe05g00058 Cpe-Chr5:296025 Cpe15g00207 Cpe-Chr15:1711316 1.95E-33 dispersed
Cpe08g00328 Cpe-Chr8:2056645 Cpe15g00207 Cpe-Chr15:1711316 1.51E-36 dispersed
Cpe08g00424 Cpe-Chr8:2703584 Cpe15g00207 Cpe-Chr15:1711316 5.05E-90 dispersed
Cpe11g00454 Cpe-Chr11:2562752 Cpe15g00207 Cpe-Chr15:1711316 1.09E-38 dispersed
Cpe12g00063 Cpe-Chr12:373524 Cpe15g00207 Cpe-Chr15:1711316 4.04E-72 dispersed
Cpe12g00145 Cpe-Chr12:936708 Cpe15g00207 Cpe-Chr15:1711316 2.37E-30 dispersed
Cpe15g00207 Cpe-Chr15:1711316 Cpe17g00262 Cpe-Chr17:1731918 5.45E-69 dispersed
Cpe16g00220 Cpe-Chr16:4360520 Cpe15g00207 Cpe-Chr15:1711316 4.31E-24 dispersed
Cpe17g00190 Cpe-Chr17:1215631 Cpe15g00207 Cpe-Chr15:1711316 5.61E-29 dispersed
Cpe15g00207 Cpe-Chr15:1711316 Cpe04g00372 Cpe-Chr4:4386496 2.35E-44 wgd
Cpe15g00207 Cpe-Chr15:1711316 Cpe05g00173 Cpe-Chr5:912739 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00207 Cpe_Chr15 FPKM 82.362366 92.872147 47.16629 45.348583 58.578999 58.149307 59.198277 48.648209 47.710606 46.618519