Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00219 ATGGATTCACGTGATACTCCACCTCCACCACTTTCTGCACCGTCCAACATGGCGATCGGAGGACCGTCGGCGTATTCAACCGCCATGACCAACGCCAACAACAATGCCTCTTCCAATATGGCTCTCTTTCCGCCTACCTCTCAGATGATGCCGCCTTCTGCGCGATTTCCGTTCAAGTCTGTGATCTCCCCTGCGTCCCTGCATTTGGATTCTATGAACGCTTCTCCTTACGACGGAACGCATTCCGGAAATTTCAATGTCGATTCCGGAAAGAAAAGGAGAGGCCGGCCGAGGAAGTACGATCCTGATGGTAATATCATCGCCTTGGGTTTGGCACCTACCACTGTTGTTACCTCTTCTGTTGTGCACGGGGATTTGAGCGCTACTCCTGATTTGGAGCAACCGGTCAGGAAACCGAGGGGAAGGCCGCGGGGCTCTGGAAAGAAACAGACGAATGCTCTTGGTTCAAGCGGCACTAGTTTTACTCCTTACGCCGTATTGGCGAAGCCTGGAGAGGATGTAGTAGCCAAAATTTTGTCATACTCACAGCAAGGAACACGAACCGCCTTTATTCTCTCTGCAAATGGTACCATCAGTAATGCTACCCTTAGACATTCGGCATTGTCTGGTGGTTCTGTGACATATAAGGGCCAGTTTGAGATCATCTCTCTGTCAGGCCCCATTTTTCCCTTGGAGAACAATGAAACTGGAAGTAGAACAGGTGGTTTGAATGTGCTCCTGGCTGGGTCAGATGGACAGGTTCTTGGTGGTGGTGTTGCAGGAATGCTCATGGCAGGTTCTCAAGTACAGGTGATTGTGGGAAATTTTCTGGAGGATGATAAAAATTTCAACACCACAAGTATGCTGAATTCTGGATCGTCTTCAGCGCCATTACAAATGATGAACTTTGGTGGTGGTGGTGGTGGTGATGCAGCATCGTCGTCATCAGCAGTAGCAGCAGCAGCAGCAGCCAGCCCTCGATCGTTAGGGGCATCGAGCGGGGAGTCATCTGCTGAAAACGGAGAGAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAATAATAATAATAATACCAGCCAGCCGATGCACAATAATAATCAGATGTACCACCAATTATGGTCAGGCCAAACGCAGCAGTGA 1143 49.52 MDSRDTPPPPLSAPSNMAIGGPSAYSTAMTNANNNASSNMALFPPTSQMMPPSARFPFKSVISPASLHLDSMNASPYDGTHSGNFNVDSGKKRRGRPRKYDPDGNIIALGLAPTTVVTSSVVHGDLSATPDLEQPVRKPRGRPRGSGKKQTNALGSSGTSFTPYAVLAKPGEDVVAKILSYSQQGTRTAFILSANGTISNATLRHSALSGGSVTYKGQFEIISLSGPIFPLENNETGSRTGGLNVLLAGSDGQVLGGGVAGMLMAGSQVQVIVGNFLEDDKNFNTTSMLNSGSSSAPLQMMNFGGGGGGDAASSSSAVAAAAAASPRSLGASSGESSAENGESPLNNRHPGMFNNNNNTSQPMHNNNQMYHQLWSGQTQQ 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1895199 1900274 + Cp4.1LG15g02210.1 Cpe15g00219 481677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00219 380 CDD DUF296 162 276 IPR005175 -
Cpe15g00219 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 46 343 - -
Cpe15g00219 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 343 IPR039605 GO:0003680
Cpe15g00219 380 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 1 23 - -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 329 366 - -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 126 157 - -
Cpe15g00219 380 Gene3D - 164 290 - -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 87 101 - -
Cpe15g00219 380 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 278 - -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 328 366 - -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 73 101 - -
Cpe15g00219 380 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00219 - - - cmos:111463805 635.565
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe14g00855 Cpe15g00219 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00979 Cpe-Chr7:8848659 Cpe15g00219 Cpe-Chr15:1895199 1.24E-38 dispersed
Cpe11g01011 Cpe-Chr11:8526798 Cpe15g00219 Cpe-Chr15:1895199 1.95E-38 dispersed
Cpe13g00070 Cpe-Chr13:546126 Cpe15g00219 Cpe-Chr15:1895199 2.12E-21 dispersed
Cpe14g00855 Cpe-Chr14:7073358 Cpe15g00219 Cpe-Chr15:1895199 6.40E-21 dispersed
Cpe10g00262 Cpe-Chr10:1572195 Cpe15g00219 Cpe-Chr15:1895199 1.68E-10 transposed
Cpe14g00956 Cpe-Chr14:8067717 Cpe15g00219 Cpe-Chr15:1895199 6.01E-37 wgd
Cpe15g00219 Cpe-Chr15:1895199 Cpe05g00182 Cpe-Chr5:955937 4.41E-103 wgd
Cpe15g00219 Cpe-Chr15:1895199 Cpe08g00855 Cpe-Chr8:6762323 1.88E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g637 . . . . . . Bma07g00961 . Cmo06g00662 Cmo16g01203 . . . . . Cpe14g00855 . Bhi11g00147 . . . Hepe06g1765 Mch10g1643 . . . . . . . . . . . . . . Chy04g00085 . Blo03g00838 Blo19g00178 . . . . . . . . Cmo19g00256 Cma06g00655 Cma16g01152 Car06g00584 Car16g01092 . Cpe15g00219 . . . . . . . . . . . . . . . . Chy06g02136 Cme04g00108
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012965 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 2 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00219 Cpe_Chr15 FPKM 7.404394 8.487379 9.20628 10.127563 6.338472 6.093818 6.208543 9.391671 7.369659 8.294837