Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00228 ATGTTACATATTGACCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCAAATTGCTTCAGAGCCTCCAGATAGACCTTCAAGTGGGTCACTTTTTCTCTTTGATCGAAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACAGTAAGAGAAGCACATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATCGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATTGGAGCTGTCGTTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGCCCTACGAGTGCTAGCTATTCCAGCAGTTATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCCCTTTGACACCATTTTGTGAAGATGGTGATACGGAAGACACCGGCCAAGCAACTTCAAGATTTCGCTCATTTCCCACGTCACCAAAAATGGGAAATGGTCTTCTGATGAATAAACAAGATGCTGACACATCAGTTCCTGCTGTGGATTATGTATCACAAGTTCAGAAAGATGTACTTGGGGGTAACATTTGTGGTACCAATGTGACGGATTCTCAGAAGACGCTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACATTGTACAACTGGATTTCAGACTGTACCTTCTCATGTTTTATCCTCTTTGATTGAACCTGTTTCTTCTGGAATTGTCGTTGGACAAGAGAATTCAATTCCTGGCCAGCCTTCAACCAGTAATAGTGCTATTACAGAGGATTTTGGGAGTTCTCTGACAATGAACTCAAACTGGCAGGTTTCTTTTGAAGACAATACTTCGTCCTTTTCAAAAGAGTACGTTGACCAGTTTCCAGAATTGTATTCAGTTTATGACATAGATAGCAGGTTAACTGAGCAGAATTCTCATAATGCAACTTTTGGAAGTGGTCGTGAGATGTCTTGTGCTCATCCTGGCATAGAGAATGAGGAGATTTTGCCAAACAACCTTGAATTACAGGTCAAAGAAGGAGAATCGTATTCTGCTATGAGGTTGAGTTCTGAAAATGATAAATCTAAAGAAGGTACCGTTGGCTATTCTTTGAGTTTGAAACAATCATTAATAGACGGAGAGGAGAGTTTAAAGAAAGTTGACAGCTTCTCGAGGTGGGTATCCAGAGAGCTTGTCGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACCGTAGAATGTGGTGATATGGTAGATAATTCATCATTAACCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGAATTTTCTCCAAAGTGGACACTTGCAGATTTGGAAACTGAGGTTGTGATTATAGGGAAGTTTCTGGGGAACAATCATGGCACAAAATGTTATTGGTCATGTATGTTTGGGGAAGTCGAAGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTATGCTGCCATGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTCACATGTTCCAACAGATTAGCATGCAGTGAGATTCGTGAGTTTGATTACTTGGCAGGCTCTGCTCAAGATGTCGATGTTACCGAAGTATATACTGCTGGTGCTACAGAGGAATTATATTTGCATATGCGATTGGAGAGGTTACTGTCCCATAGATCTTCAAATCCTCCAAATAATCTCTCTGAAGGTGCTTTGGCGAAACGGAACTTAATCAGAGAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAGGAGCCAAATTCTCATAATGTTCAAATTCAGCATCAAAACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAAGTGTACTCATGGCTTATCCGCAAAGTCATTGAAGGTGGCAAAGGTCCTCATATATTGGATGATGAGGGACAGGGGTTAATTCATTTAGCAGCAGCCCTCGGTTATGATTGGGCAATCCGACCAATTGTCGCTGCAGGAGTGAGCATAAACTTCCGAGACGTTAATGGATGGACTGCTCTCCATTGGGCAGCATTCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACATTGAATGCTGCTCCTGGATTGCCGGCTGATCCTTCTCCAAAAAATCCTTTGGGGATATCGCCATCTGAGCTTGCATCGATGAGTGGGCACAAAGGGATTGCTGGTTTCCTTGCAGAGTCATCATTGACCAGCTATATCGAATCCATATCAATGGGGGAGACCGTAAAAGATGGTGTGCTGGATGTTTCAAAGAGGAAACCTGTGCATACTATTTCTGAACGAAGGGCAACACCGATAAGTGATGGTTTTATGCCTGCTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGGCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCGGAGTGTAGTCCTGATGAACTTGGATCCTCAGATGATACTGCTATTTCATTTGCCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGCCCATGCCGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAGTTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCACGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATCGTCTGGTCCGTAGGCATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGTTTCCGATCAGATGCAGCTGCGAAGAATCCATCCGCCGTGATGGAACCACCTAAAGAGGATGATTATGATTTTCTGGCGAAAGGAAGGAAGCAGACTGAGGAAAGATTTCAAAAAGCACTGACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTTCTTACCGTCGTTCAAAAGTGCCAAGAAACCAAGGCAAGTAATATGGCTATTACTAGCACTAGAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCACTTCTGGACGACGACGCTTTGATGTCTATGACATTTGATTGA 3201 42.64 MLHIDQLLIEAKHRWLRPAEICEILRNYPKFQIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPTSASYSSSYNQAASENADSPSPTSPLTPFCEDGDTEDTGQATSRFRSFPTSPKMGNGLLMNKQDADTSVPAVDYVSQVQKDVLGGNICGTNVTDSQKTLSSASWEEILQHCTTGFQTVPSHVLSSLIEPVSSGIVVGQENSIPGQPSTSNSAITEDFGSSLTMNSNWQVSFEDNTSSFSKEYVDQFPELYSVYDIDSRLTEQNSHNATFGSGREMSCAHPGIENEEILPNNLELQVKEGESYSAMRLSSENDKSKEGTVGYSLSLKQSLIDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDNSSLTPSLSEDQLFSITEFSPKWTLADLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEIREFDYLAGSAQDVDVTEVYTAGATEELYLHMRLERLLSHRSSNPPNNLSEGALAKRNLIRELISIKEEEDCYGEEPNSHNVQIQHQNKEFLFVKLMKEKVYSWLIRKVIEGGKGPHILDDEGQGLIHLAAALGYDWAIRPIVAAGVSINFRDVNGWTALHWAAFCGRELTVGTLITLNAAPGLPADPSPKNPLGISPSELASMSGHKGIAGFLAESSLTSYIESISMGETVKDGVLDVSKRKPVHTISERRATPISDGFMPADLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECSPDELGSSDDTAISFAKARARKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDAAAKNPSAVMEPPKEDDYDFLAKGRKQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCQETKASNMAITSTREEIIEGDDMIDIDSLLDDDALMSMTFD 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2067654 2082035 - Cp4.1LG15g02270.1 Cpe15g00228 481686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00228 1066 MobiDBLite consensus disorder prediction 189 210 - -
Cpe15g00228 1066 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 3 1066 - -
Cpe15g00228 1066 SMART iq_5 912 934 IPR000048 GO:0005515
Cpe15g00228 1066 SMART iq_5 889 911 IPR000048 GO:0005515
Cpe15g00228 1066 ProSiteProfiles IQ motif profile. 890 919 IPR000048 GO:0005515
Cpe15g00228 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 890 940 IPR027417 -
Cpe15g00228 1066 MobiDBLite consensus disorder prediction 136 177 - -
Cpe15g00228 1066 ProSiteProfiles IQ motif profile. 913 937 IPR000048 GO:0005515
Cpe15g00228 1066 Pfam IPT/TIG domain 480 559 IPR002909 -
Cpe15g00228 1066 Gene3D - 645 815 IPR036770 -
Cpe15g00228 1066 Gene3D - 890 937 - -
Cpe15g00228 1066 CDD IPT 480 566 - -
Cpe15g00228 1066 SUPERFAMILY Ankyrin repeat 665 775 IPR036770 -
Cpe15g00228 1066 Pfam CG-1 domain 10 123 IPR005559 GO:0003677
Cpe15g00228 1066 Gene3D Immunoglobulins 474 569 IPR013783 -
Cpe15g00228 1066 Pfam IQ calmodulin-binding motif 915 934 IPR000048 GO:0005515
Cpe15g00228 1066 Pfam IQ calmodulin-binding motif 891 910 IPR000048 GO:0005515
Cpe15g00228 1066 MobiDBLite consensus disorder prediction 136 210 - -
Cpe15g00228 1066 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 3 1066 - -
Cpe15g00228 1066 SMART CG_1_2 7 125 IPR005559 GO:0003677
Cpe15g00228 1066 ProSiteProfiles CG-1 DNA-binding domain profile. 4 130 IPR005559 GO:0003677
Cpe15g00228 1066 SUPERFAMILY E set domains 481 565 IPR014756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00228 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1715.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00228 Cpe-Chr15:2067654 Cpe17g01072 Cpe-Chr17:8150984 1.90E-12 dispersed
Cpe03g01309 Cpe-Chr3:10599106 Cpe15g00228 Cpe-Chr15:2067654 4.91E-60 transposed
Cpe14g00612 Cpe-Chr14:3876868 Cpe15g00228 Cpe-Chr15:2067654 1.86E-60 transposed
Cpe15g00228 Cpe-Chr15:2067654 Cpe04g00378 Cpe-Chr4:4432433 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00378 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 2.7e-269 925.6
Cpe15g00228 . 2 1066 CAMTA Transcription Factor Family AT5G64220 51.9 6.7e-260 894.4
Cpe01g00967 . 6 935 CAMTA Transcription Factor Family AT1G67310 51.0 6.8e-249 857.8
Cpe17g00057 CST 34 921 CAMTA Transcription Factor Family AT3G16940 54.1 1.9e-254 875.9
Cpe12g00311 CST 34 900 CAMTA Transcription Factor Family AT3G16940 53.7 1.1e-252 870.2
Cpe12g00311 CST 11 624 CAMTA Transcription Factor Family AT4G16150 52.6 7.6e-191 664.8
Cpe17g00057 CST 11 645 CAMTA Transcription Factor Family AT4G16150 51.6 1.3e-185 647.5
Cpe04g00378 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 2.7e-269 925.6
Cpe15g00228 . 2 1066 CAMTA Transcription Factor Family AT5G64220 51.9 6.7e-260 894.4
Cpe01g00967 . 6 935 CAMTA Transcription Factor Family AT1G67310 51.0 6.8e-249 857.8
Cpe12g00311 CST 11 624 CAMTA Transcription Factor Family AT4G16150 52.6 7.6e-191 664.8
Cpe17g00057 CST 11 645 CAMTA Transcription Factor Family AT4G16150 51.6 1.3e-185 647.5
Cpe17g00057 CST 34 921 CAMTA Transcription Factor Family AT3G16940 54.1 1.9e-254 875.9
Cpe12g00311 CST 34 900 CAMTA Transcription Factor Family AT3G16940 53.7 1.1e-252 870.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50600 PF03859 CG-1 8.70E-51 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00228 Cpe_Chr15 FPKM 294.037415 330.069336 158.998993 158.663712 209.848038 215.070496 192.383774 14.239739 14.305965 16.705374