Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00255 ATGGCAGATGGTGAAGATATCCAACCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCGGGCGATGATGCTCCGAGGGCTGTGTTTCCCAGTATTGTCGGGCGACCACGTCACACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGTGATGAAGCTCAATCCAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCACGGCATCGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACGTTCTACAACGAGCTTCGTGTTGCTCCGGAAGAGCATCCGATACTTCTTACCGAAGCACCACTTAACCCGAAGGCAAACAGGGAGAAGATGACGCAGATCATGTTTGAAACGTTTGACGTTCCTGCTATGTATGTTGCTATCCAGGCCGTTTTATCTCTCTATGCTAGCGGTCGAACAACAGGTATTGTGTTGGATTCTGGGGATGGAGTGAGCCACACGGTGCCAATATACGAGGGGTTTTCGCTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTAACGGATGCATTGATGAAAATCCTTACCGAAAGAGGTTACATGTTCACGACAACAGCCGAGCGAGAAATTGTCCGTGACGTGAAGGAGAAGCTTGCATATGTGGCTCTTGATTACGAACAAGAACTTGAGACAGCCAGGACTAGTTCAGCCATCGAAAAAAGCTATGAACTACCAGACGGGCAGGTGATTACAATAGGAGCCGAGAGATTCCGTTGCCCAGAAGTACTTTTCCAGCCATCGCTGATCGGCATGGAATCACCCGGTATCCACGAAACCACATACAACTCTATCATGAAGTGTGATGTTGATATCAGGAAAGACTTATACGGTAACATCGTACTCAGTGGCGGTACGACAATGTTCCCCGGCATTGCCGATCGTATGAGCAAAGAAATCACCGCTCTCGCTCCGAGCAGCATGAAGATTAAGGTCGTTGCACCTCCAGAAAGAAAGTACAGTGTTTGGATTGGAGGATCCATCCTGGCATCCCTCAGTACCTTCCAACAGATGTGGATAACGAAGGCTGAATACGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTGA 1134 48.32 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2430022 2434834 - Cp4.1LG15g02570.1 Cpe15g00255 481713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00255 377 PANTHER ACTIN-2-LIKE 1 376 - -
Cpe15g00255 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cpe15g00255 377 PANTHER ACTIN 1 376 IPR004000 -
Cpe15g00255 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cpe15g00255 377 Gene3D - 10 371 - -
Cpe15g00255 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cpe15g00255 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cpe15g00255 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cpe15g00255 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cpe15g00255 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cpe15g00255 377 Gene3D - 140 340 - -
Cpe15g00255 377 SMART actin_3 7 377 IPR004000 -
Cpe15g00255 377 Pfam Actin 5 377 IPR004000 -
Cpe15g00255 377 PRINTS Actin signature 28 37 IPR004000 -
Cpe15g00255 377 PRINTS Actin signature 51 62 IPR004000 -
Cpe15g00255 377 PRINTS Actin signature 63 85 IPR004000 -
Cpe15g00255 377 PRINTS Actin signature 117 130 IPR004000 -
Cpe15g00255 377 PRINTS Actin signature 142 161 IPR004000 -
Cpe15g00255 377 PRINTS Actin signature 238 254 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01058 Cpe-Chr11:8885816 Cpe15g00255 Cpe-Chr15:2430022 3.22E-51 dispersed
Cpe15g00255 Cpe-Chr15:2430022 Cpe10g00351 Cpe-Chr10:2078847 0 dispersed
Cpe18g00750 Cpe-Chr18:7247328 Cpe15g00255 Cpe-Chr15:2430022 3.68E-71 transposed
Cpe15g00255 Cpe-Chr15:2430022 Cpe04g00400 Cpe-Chr4:4643168 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00255 K10355 - csv:101214459 755.362