Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe15g00258 | ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTGGGCGGTGCGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCCGGAACACCCGCTATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAACACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTTGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACTCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACTAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGGAAGCAATTGGATCAAGCGAACGTGTACGGTGCCACTGTGCAACAGCCACGACCACCTATGCCGTTCATGCCATGGCCGCACACTCAACCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGA | 756 | 49.07 | MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATVQQPRPPMPFMPWPHTQPQQQQQQQQQQ | 251 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 2468536 | 2469291 | - | Cp4.1LG15g02590.1 | Cpe15g00258 | 481716 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe15g00258 | 251 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 9 | 247 | - | - | |
| Cpe15g00258 | 251 | SUPERFAMILY | Histone-fold | 60 | 162 | IPR009072 | GO:0046982 | |
| Cpe15g00258 | 251 | Gene3D | Histone, subunit A | 54 | 168 | IPR009072 | GO:0046982 | |
| Cpe15g00258 | 251 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 9 | 247 | - | - | |
| Cpe15g00258 | 251 | MobiDBLite | consensus disorder prediction | 224 | 251 | - | - | |
| Cpe15g00258 | 251 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Cpe15g00258 | 251 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Cpe15g00258 | 251 | Pfam | Core histone H2A/H2B/H3/H4 | 63 | 153 | IPR007125 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g01183 | Cpe-Chr1:7036369 | Cpe15g00258 | Cpe-Chr15:2468536 | 5.20E-12 | dispersed | |
| Cpe14g00500 | Cpe-Chr14:3170573 | Cpe15g00258 | Cpe-Chr15:2468536 | 6.67E-31 | dispersed | |
| Cpe15g00258 | Cpe-Chr15:2468536 | Cpe04g00147 | Cpe-Chr4:1422317 | 4.23E-77 | dispersed | |
| Cpe15g00258 | Cpe-Chr15:2468536 | Cpe04g00402 | Cpe-Chr4:4668502 | 3.15E-135 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50603 | PF00125 | Histone | 8.00E-18 | CL0012 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe15g00258 | K08066 | - | csv:101213813 | 363.614 |