Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00260 ATGGAGAATATAACAGCCCAATTAAAAAGGGGAATATCGCGGCAATTCTCCACCGGCTCCTTACGCCGGAGTCTCAGTCGCCAATTCTCCAGGCAGTCGTCTCTTGATCCGAGGAGGAATAATATGAGATTTAGCTTTGGGAGACAGTCTTCTTTGGACCCTATTCGGCGTTGTCTTGATGAGGAAAATGAACTTTCTGTGCCCGAGAATTTGGATTCCACGATGCAGCTTCTTTTCATGGCTTGCCGTGGCGATGTTAGAGGCGTTCAGGATTTGCTTAATGATGGTACCGATGTTAATAGTATCGATTTGGATGGTCGCACCGCTTTGCATATTGCTGCTTGTGAAGGCCATGCTGAGGTTGTTAAGCTTCTGCTTAGTCGTTGGGCTAATATTGACGCTCGTGATCGTTGGGGGAGTACGAAATCGAGGAAGACACCAATGACAGTTGCAAATCCTAGGGAAGTTCCTGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGGGTGATGGTATATCAAAGGCATGCCCCTTCACCATTTTTGGGACATATCAAGTTGCCAAATGGAATGGTACAAAAGTGTCTGTGAAAATTCTTGATAGAGATTGTTATTCTAACCCGGATTCTATAAACGCATTCAAACACGAGTTGACATTACTCGAAAAGGTCCGACATCCCAACGTAGTTCAGTTTGTCGGTGCTGTTACCCAGAATTTGCCAATGATGATCGTTTCCGAATACCATCCAAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAGGGTCGTTTATCTCCATCGAAAGCCTTAAGATTCGCCCTCGATATCGCTAGGCAAGTTCTGGGAATGAACTATCTTCATGAATGCAAACCCGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACTACTCAAAGTTGCTGGCTTTGGCTTGATAAGATTGTCAAAATTGTCAGCTGACAAAGCAAAACTAGCTCACCCAGTGGTTATTGACCATTCAAACATGTACTTAGCACCCGAAATTTACAGAGATGAAATATTTGACAGAAGCGTTGATGCATTTTCGTTCGGTCTAATTTTATACGAGATGGTTGAGGGTATTCAGCCACTCCATCCCAGGCCTCCAGAAGAGGCTGCTAAAGCTATTTGTGCAGAAGGAAAGAGACCTCCTTTTAAGATCAAATTGAAAAGTTATCCACCTGATCTAAAGGAGTAA 1242 43.24 MENITAQLKRGISRQFSTGSLRRSLSRQFSRQSSLDPRRNNMRFSFGRQSSLDPIRRCLDEENELSVPENLDSTMQLLFMACRGDVRGVQDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKLLLSRWANIDARDRWGSTKSRKTPMTVANPREVPEYELNPLELQIRRGDGISKACPFTIFGTYQVAKWNGTKVSVKILDRDCYSNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARQVLGMNYLHECKPDPIIHCDLKPKNILLDNGGLLKVAGFGLIRLSKLSADKAKLAHPVVIDHSNMYLAPEIYRDEIFDRSVDAFSFGLILYEMVEGIQPLHPRPPEEAAKAICAEGKRPPFKIKLKSYPPDLKE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2500904 2504851 + Cp4.1LG15g02600.1 Cpe15g00260 481718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00260 413 SMART serkin_6 180 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe15g00260 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Cpe15g00260 413 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 142 413 - -
Cpe15g00260 413 ProSiteProfiles Protein kinase domain profile. 168 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe15g00260 413 Gene3D Phosphorylase Kinase; domain 1 176 250 - -
Cpe15g00260 413 Gene3D Transferase(Phosphotransferase) domain 1 251 413 - -
Cpe15g00260 413 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 142 413 - -
Cpe15g00260 413 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Cpe15g00260 413 SUPERFAMILY Ankyrin repeat 75 141 IPR036770 -
Cpe15g00260 413 SUPERFAMILY Protein kinase-like (PK-like) 183 401 IPR011009 -
Cpe15g00260 413 Pfam Protein tyrosine and serine/threonine kinase 189 399 IPR001245 GO:0004672|GO:0006468
Cpe15g00260 413 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 32 142 - -
Cpe15g00260 413 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Cpe15g00260 413 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 32 142 - -
Cpe15g00260 413 Gene3D - 67 151 IPR036770 -
Cpe15g00260 413 SMART ANK_2a 73 101 IPR002110 GO:0005515
Cpe15g00260 413 SMART ANK_2a 105 134 IPR002110 GO:0005515
Cpe15g00260 413 Pfam Ankyrin repeat 105 136 IPR002110 GO:0005515
Cpe15g00260 413 PIRSF ILK 140 413 - -
Cpe15g00260 413 PIRSF ILK 8 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00123 Cpe-Chr10:793322 Cpe15g00260 Cpe-Chr15:2500904 3.43E-111 dispersed
Cpe15g00260 Cpe-Chr15:2500904 Cpe16g00735 Cpe-Chr16:7431807 4.94E-108 dispersed
Cpe15g00260 Cpe-Chr15:2500904 Cpe04g00403 Cpe-Chr4:4678275 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62852 PF07714 PK_Tyr_Ser-Thr 2.00E-37 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00260 - - csv:101213574 726.472