Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe15g00304 | ATGGGGAAGCATGGACCTTGCTGTCACTGTGGAGTTATAAGCACTCCTCTTTGGCGTAATGGACCCCCCGACAAACCGGTGTTATGCAATGCATGTGGATCCCGATGGAGGACAAAAGGAACACTCACAAACTATACCCCGTTGCATGCTCGGACTGTTCCTGATGAATATGAAGATCACAGGGCTTCCAGGGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTAAAACTGCTGAAACGAAAGCTACAACAAGCCGATGGATCGATTGCGTGGACGCTTCCCGATCAAGGTCAGGATTACCATAGAGTAGTGGATGAAGACACAAGCAATAGGTCGAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAGTAGTGTGGGAGACAACGGTGCCTTCGAGGAAGAGGACGTGTGTGACTCGTCCAAAGCAATCCCCGGTTGAAAAACTGACTAAAGATCTATGTAGTATTTTACGAGAGCAGAGATCCTCCTATTTCTCCGAAGCTTCCGAGGACGATCTGCTTTTCGAGAGCGAAAAACCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGACGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATACTTGATAAATGATATCTATTCCCCTCATTCTGCAACTGTTCTTGTATGTAGTGAACAACAAGAACAGTTTAACAGGGACGAGTCTCGTCACGAATGCTTACAAGTTCTTGGAAACCACGACTCGCCCTTATGTGATGTAGATATAAATGACGTCGTGAACTTCGGAGAGTTTGCGAGACGGTTAACAAATGAAGAACAACAGCAACTAATGAAGTACCTACCACAGGTTGATATCGCTGAATTTCCCGAGACTGTCAAGAGAATGTTTGATAGCCCCTATTTCAAGGAGAATTTAATGTCCTTCCAACAACTGCTTAGTGAGGGCGTTTTCGATGCCTCCTTCCTTGGAACGAAGATCGAAGACTGCAAGACTCTGAGAAGGCTCGTATTATCTAATTCATCAAAATCCAAATGGGTCGAGCTCTATCAACAACTGAAGAAATGTGAAAATGGTAGCAAAGAACCTTTTCTTTCCCGTGCCAACACGTCGGTGTCGAGTAACTACATGAATGTTGATGAGAGCTACAATCAAACTATTCCAGAGGTAAAGACTATCATGAAGAGTCCCAAAAGATTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTACAAGCTTATTTGCCTTGCCACCTGATGGAAGCTACGACATGTTCGACTGCTTGCATTTCGTTGAAGAACGTTCGGATCACGGTCTATTGTTAGAGGTACGGTCGAATAGTTCGTTCCCACAAGCCGAGCTCCTTCACCCGACCTCTCGTTCTGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA | 1551 | 45.2 | MGKHGPCCHCGVISTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNKEVKLLKRKLQQADGSIAWTLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSVVWETTVPSRKRTCVTRPKQSPVEKLTKDLCSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIARDEESEASSVSVDNKQYLINDIYSPHSATVLVCSEQQEQFNRDESRHECLQVLGNHDSPLCDVDINDVVNFGEFARRLTNEEQQQLMKYLPQVDIAEFPETVKRMFDSPYFKENLMSFQQLLSEGVFDASFLGTKIEDCKTLRRLVLSNSSKSKWVELYQQLKKCENGSKEPFLSRANTSVSSNYMNVDESYNQTIPEVKTIMKSPKRLVMKENKDPGENDGSCFSPTSLFALPPDGSYDMFDCLHFVEERSDHGLLLEVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 3909388 | 3915666 | - | Cp4.1LG15g03070.1 | Cpe15g00304 | 481762 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe15g00304 | 516 | MobiDBLite | consensus disorder prediction | 491 | 510 | - | - | |
Cpe15g00304 | 516 | CDD | ZnF_GATA | 6 | 54 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe15g00304 | 516 | PANTHER | GATA TRANSCRIPTION FACTOR 26 | 254 | 516 | - | - | |
Cpe15g00304 | 516 | PANTHER | GATA TRANSCRIPTION FACTOR 26 | 1 | 256 | - | - | |
Cpe15g00304 | 516 | SMART | GATA_3 | 1 | 55 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe15g00304 | 516 | PANTHER | OSJNBB0038F03.10 PROTEIN | 1 | 256 | IPR044589 | - | |
Cpe15g00304 | 516 | PANTHER | OSJNBB0038F03.10 PROTEIN | 254 | 516 | IPR044589 | - | |
Cpe15g00304 | 516 | Pfam | GATA zinc finger | 7 | 41 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe15g00304 | 516 | MobiDBLite | consensus disorder prediction | 491 | 516 | - | - | |
Cpe15g00304 | 516 | Gene3D | - | 4 | 84 | IPR013088 | GO:0006355|GO:0008270 | |
Cpe15g00304 | 516 | ProSiteProfiles | DEUBAD (DEUBiquitinase ADaptor) domain profile. | 275 | 387 | IPR044867 | - | |
Cpe15g00304 | 516 | ProSiteProfiles | GATA-type zinc finger domain profile. | 7 | 40 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe15g00304 | 516 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 46 | - | - | |
Cpe15g00304 | 516 | Gene3D | - | 272 | 363 | IPR038108 | - | |
Cpe15g00304 | 516 | Pfam | Asx homology domain | 263 | 348 | IPR028020 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00714 | Cpe-Chr8:5587559 | Cpe15g00304 | Cpe-Chr15:3909388 | 0 | dispersed | |
Cpe14g00916 | Cpe-Chr14:7710007 | Cpe15g00304 | Cpe-Chr15:3909388 | 2.70E-165 | dispersed | |
Cpe15g00304 | Cpe-Chr15:3909388 | Cpe02g01690 | Cpe-Chr2:13929892 | 9.16E-08 | dispersed | |
Cpe15g00304 | Cpe-Chr15:3909388 | Cpe05g00222 | Cpe-Chr5:1252047 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50606 | PF13919 | ASXH | 5.90E-08 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe15g00304 | - | - | cmax:111470531 | 1018.84 |