Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00304 ATGGGGAAGCATGGACCTTGCTGTCACTGTGGAGTTATAAGCACTCCTCTTTGGCGTAATGGACCCCCCGACAAACCGGTGTTATGCAATGCATGTGGATCCCGATGGAGGACAAAAGGAACACTCACAAACTATACCCCGTTGCATGCTCGGACTGTTCCTGATGAATATGAAGATCACAGGGCTTCCAGGGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTAAAACTGCTGAAACGAAAGCTACAACAAGCCGATGGATCGATTGCGTGGACGCTTCCCGATCAAGGTCAGGATTACCATAGAGTAGTGGATGAAGACACAAGCAATAGGTCGAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAGTAGTGTGGGAGACAACGGTGCCTTCGAGGAAGAGGACGTGTGTGACTCGTCCAAAGCAATCCCCGGTTGAAAAACTGACTAAAGATCTATGTAGTATTTTACGAGAGCAGAGATCCTCCTATTTCTCCGAAGCTTCCGAGGACGATCTGCTTTTCGAGAGCGAAAAACCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGACGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATACTTGATAAATGATATCTATTCCCCTCATTCTGCAACTGTTCTTGTATGTAGTGAACAACAAGAACAGTTTAACAGGGACGAGTCTCGTCACGAATGCTTACAAGTTCTTGGAAACCACGACTCGCCCTTATGTGATGTAGATATAAATGACGTCGTGAACTTCGGAGAGTTTGCGAGACGGTTAACAAATGAAGAACAACAGCAACTAATGAAGTACCTACCACAGGTTGATATCGCTGAATTTCCCGAGACTGTCAAGAGAATGTTTGATAGCCCCTATTTCAAGGAGAATTTAATGTCCTTCCAACAACTGCTTAGTGAGGGCGTTTTCGATGCCTCCTTCCTTGGAACGAAGATCGAAGACTGCAAGACTCTGAGAAGGCTCGTATTATCTAATTCATCAAAATCCAAATGGGTCGAGCTCTATCAACAACTGAAGAAATGTGAAAATGGTAGCAAAGAACCTTTTCTTTCCCGTGCCAACACGTCGGTGTCGAGTAACTACATGAATGTTGATGAGAGCTACAATCAAACTATTCCAGAGGTAAAGACTATCATGAAGAGTCCCAAAAGATTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTACAAGCTTATTTGCCTTGCCACCTGATGGAAGCTACGACATGTTCGACTGCTTGCATTTCGTTGAAGAACGTTCGGATCACGGTCTATTGTTAGAGGTACGGTCGAATAGTTCGTTCCCACAAGCCGAGCTCCTTCACCCGACCTCTCGTTCTGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 1551 45.2 MGKHGPCCHCGVISTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNKEVKLLKRKLQQADGSIAWTLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSVVWETTVPSRKRTCVTRPKQSPVEKLTKDLCSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIARDEESEASSVSVDNKQYLINDIYSPHSATVLVCSEQQEQFNRDESRHECLQVLGNHDSPLCDVDINDVVNFGEFARRLTNEEQQQLMKYLPQVDIAEFPETVKRMFDSPYFKENLMSFQQLLSEGVFDASFLGTKIEDCKTLRRLVLSNSSKSKWVELYQQLKKCENGSKEPFLSRANTSVSSNYMNVDESYNQTIPEVKTIMKSPKRLVMKENKDPGENDGSCFSPTSLFALPPDGSYDMFDCLHFVEERSDHGLLLEVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3909388 3915666 - Cp4.1LG15g03070.1 Cpe15g00304 481762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00304 516 MobiDBLite consensus disorder prediction 491 510 - -
Cpe15g00304 516 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Cpe15g00304 516 PANTHER GATA TRANSCRIPTION FACTOR 26 254 516 - -
Cpe15g00304 516 PANTHER GATA TRANSCRIPTION FACTOR 26 1 256 - -
Cpe15g00304 516 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cpe15g00304 516 PANTHER OSJNBB0038F03.10 PROTEIN 1 256 IPR044589 -
Cpe15g00304 516 PANTHER OSJNBB0038F03.10 PROTEIN 254 516 IPR044589 -
Cpe15g00304 516 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cpe15g00304 516 MobiDBLite consensus disorder prediction 491 516 - -
Cpe15g00304 516 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Cpe15g00304 516 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 275 387 IPR044867 -
Cpe15g00304 516 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cpe15g00304 516 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 46 - -
Cpe15g00304 516 Gene3D - 272 363 IPR038108 -
Cpe15g00304 516 Pfam Asx homology domain 263 348 IPR028020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00714 Cpe-Chr8:5587559 Cpe15g00304 Cpe-Chr15:3909388 0 dispersed
Cpe14g00916 Cpe-Chr14:7710007 Cpe15g00304 Cpe-Chr15:3909388 2.70E-165 dispersed
Cpe15g00304 Cpe-Chr15:3909388 Cpe02g01690 Cpe-Chr2:13929892 9.16E-08 dispersed
Cpe15g00304 Cpe-Chr15:3909388 Cpe05g00222 Cpe-Chr5:1252047 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50606 PF13919 ASXH 5.90E-08 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00304 - - cmax:111470531 1018.84