Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00346 ATGGCTACGTTTTATCTCTCTACGGGAGTGCCGCTACTGAAATCTGATTCTACCAGAGTTGCTGACCGCCTTGCATCGTGTAGAAACGTTTCTGATGCGTTTGGTATTGAAGCGAAGAGTGGAAGGATGTATGTGCAATCGAAACAAATCGCTTTGATTAGATGCTCGAGAATAGCCGAGAAGCAGGATGTTGCGTCGTATAAAGGCTCTCTGGACACTGATCAGGACATTTCGAACTCTACCTTTGATCATCAATCTAATGGATTCCCTCTTAGTAGGATGAAGTTAACCACGAAATCTAGAAGGAAAACTAAGATAGTCTGCACCATTGGTCCTTCCACAAGTTCACGTGAAATGATATGGAAATTGGCAGAGATGGGTATGAATGTGGCACGTTTAAACATGTCCCACGGTGATCATTCTACCCACCAGAAAACCATTGATTTGGTCAAGGAATATAACGCACAATTTAAAGACAAAGTTATAGCCATTATGCTTGACACAAAGGGCCCTGAGGTTCGAAGTGGAGATGTACCTAAACCAATCTTGCTCAAAGATGGACAAGAATTTAACTTCACAATCAAAAGAGGAGTCAGCACAGAAGACACTGTTAGTGTTAACTATGACGACTTTATAAATGATGTAGAAGTTGGCGATAGTGTGCTTGTTGATGGTGGAATGATCTCATTGACTGTTAAGTCGAAGACAAATGATTTGGTTAATTGTGTAGTCATTGATGGCGGCGAACTCAAATCAAGGCGCCATTTGAATGTTCGTGGAAAAAGTGCGACATTGCCTTCTATAACAGACAAGGACTGGGATGATATAAAGTTTGGGGTGGATAATCAGGTTGATTTTTATGCTGTTTCTTTTGTAAAGGATGCTAGAGTGGTCCATGAGCTGAAAGACTATCTGAAAAGCTGTAATGCAGATATTCATGTGATTGTAAAAATTGAAAGTGCAGACTCAATACCTAATCTTCATTCAATACTTTCAGCATCAGATGGGGCAATGGTAGCTCGTGGAGACCTTGGGGCTGAACTTCCAATCGAGGAAGTTCCTTTATTGCAGGAAACTATTATCAAAAGGTGTCAGAGCATGCAGAAACCAGTTATTGTAGCAACAAACATGCTGGAAAGCATGATTGATCATCCCACACCAACTAGAGCTGAGGTTTCTGATATTTCTATTGCAGTACGAGAAGGTGCTGATGCAATCATGCTTTCAGGAGAAACTGCTCATGGAAAGTATCCATTGAAGGCTGTGAACGTGATGCACACCGTGGCTTTGAGGATGGAATCTACTCTTCCAGTTAATTCTACTACTCCAAATCCATTGAGTGTCCACAAGAGACATATGGGAGACATGCTTGCTTTCCATACCACCACTATGGCCAACACCCTTAAGACTCCTATCATCGTTTTCACAAGAACTGGCTCCATGGCTATCCTCTTGAGTCATTACAGGCCCTGCTCTACTATCTTTGCCTTCACTGACGACGATAGGATCAAACAAAGGCTGGTGCTTTATCATGGGGTCATGCCCATTTACATGCAGTTTTCAAGTGATGCAGAAGAGACGTTCTCCAGAGCACTCGAGTTATTGGTGGATAAGGGTCACGTGGTAGATGGAGACCACGTTACGCTTGTACAAAGTGGAGCTCAACCAATTTGGCGGAAAGAATCTATTCACCACATTCAAGTACGTAGGATCCTAGGTTGA 1722 42.45 MATFYLSTGVPLLKSDSTRVADRLASCRNVSDAFGIEAKSGRMYVQSKQIALIRCSRIAEKQDVASYKGSLDTDQDISNSTFDHQSNGFPLSRMKLTTKSRRKTKIVCTIGPSTSSREMIWKLAEMGMNVARLNMSHGDHSTHQKTIDLVKEYNAQFKDKVIAIMLDTKGPEVRSGDVPKPILLKDGQEFNFTIKRGVSTEDTVSVNYDDFINDVEVGDSVLVDGGMISLTVKSKTNDLVNCVVIDGGELKSRRHLNVRGKSATLPSITDKDWDDIKFGVDNQVDFYAVSFVKDARVVHELKDYLKSCNADIHVIVKIESADSIPNLHSILSASDGAMVARGDLGAELPIEEVPLLQETIIKRCQSMQKPVIVATNMLESMIDHPTPTRAEVSDISIAVREGADAIMLSGETAHGKYPLKAVNVMHTVALRMESTLPVNSTTPNPLSVHKRHMGDMLAFHTTTMANTLKTPIIVFTRTGSMAILLSHYRPCSTIFAFTDDDRIKQRLVLYHGVMPIYMQFSSDAEETFSRALELLVDKGHVVDGDHVTLVQSGAQPIWRKESIHHIQVRRILG 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4647442 4658722 + Cp4.1LG15g03400.1 Cpe15g00346 481804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00346 573 SUPERFAMILY PK C-terminal domain-like 420 568 IPR036918 -
Cpe15g00346 573 Pfam Pyruvate kinase, barrel domain 102 438 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe15g00346 573 ProSitePatterns Pyruvate kinase active site signature. 312 324 IPR018209 GO:0004743|GO:0006096
Cpe15g00346 573 PANTHER PYRUVATE KINASE 44 571 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe15g00346 573 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 100 436 IPR015813 GO:0003824
Cpe15g00346 573 SUPERFAMILY PK beta-barrel domain-like 171 262 IPR011037 -
Cpe15g00346 573 Gene3D - 433 551 IPR036918 -
Cpe15g00346 573 Pfam Pyruvate kinase, alpha/beta domain 461 551 IPR015795 -
Cpe15g00346 573 Gene3D - 171 266 IPR015806 GO:0004743|GO:0006096
Cpe15g00346 573 TIGRFAM pyruv_kin: pyruvate kinase 102 568 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe15g00346 573 Gene3D - 102 432 IPR040442 -
Cpe15g00346 573 PRINTS Pyruvate kinase family signature 160 176 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe15g00346 573 PRINTS Pyruvate kinase family signature 284 298 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe15g00346 573 PRINTS Pyruvate kinase family signature 314 340 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe15g00346 573 PRINTS Pyruvate kinase family signature 341 365 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe15g00346 573 PRINTS Pyruvate kinase family signature 366 390 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe15g00346 573 PRINTS Pyruvate kinase family signature 391 409 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe15g00346 573 PRINTS Pyruvate kinase family signature 410 426 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe15g00346 573 PANTHER PLASTIDIAL PYRUVATE KINASE 3, CHLOROPLASTIC 44 571 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00346 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101222828 888.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00052 Cpe-Chr9:316510 Cpe15g00346 Cpe-Chr15:4647442 0 dispersed
Cpe14g00069 Cpe-Chr14:379996 Cpe15g00346 Cpe-Chr15:4647442 0 dispersed
Cpe15g00346 Cpe-Chr15:4647442 Cpe17g00168 Cpe-Chr17:1066473 1.49E-118 dispersed
Cpe15g00346 Cpe-Chr15:4647442 Cpe05g00197 Cpe-Chr5:1058077 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g659 . Blo03g00059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00775 . . . . . . . Cmo19g00460 . . . . . Cpe15g00346 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00346 Cpe_Chr15 FPKM 13.462151 14.782703 51.805038 48.404022 36.062668 37.805134 34.971958 38.450947 39.115818 36.725967