Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00350 ATGGCACTTAGAATGTGGGCTTCTTCTACTGCTAATGCACTCAGACTTTCATCTGCATCTAAAACCCATCTCTCTTCTCCATTCTCTCTCTCCAGATGCTTTTCCACCGTTTTGGATGGACTGAAGTATGCTTCTTCTCATGAGTGGGTGAAGCATGAGGGTGAGGTTGCTACTGTTGGCATCACTGACCATGCTCAGGACCATCTAGGAGAAGTGGTGTTTGTGGATCTGCCAGAATCAGGTGGTTCAGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAAAGTGTCAAAGCAACAAGTGATATCAACTCCCCAATCTCTGGTGAAATTGTTGAAGTTAACCCACAGCTTAAGGATTCTCCTGGTTTGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAATCCAGCTGAATTGGATTCGTTGTTTGGTCCAAAGGAATATACAAAGCATTGTGAGGAAGAAGATGCAGCCCACTAG 498 44.58 MALRMWASSTANALRLSSASKTHLSSPFSLSRCFSTVLDGLKYASSHEWVKHEGEVATVGITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKDSPGLINSSPYEGGWMIKVKPSNPAELDSLFGPKEYTKHCEEEDAAH 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4719565 4722725 + Cp4.1LG15g03480.1 Cpe15g00350 481808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00350 165 Pfam Glycine cleavage H-protein 41 160 IPR033753 -
Cpe15g00350 165 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 1 165 - -
Cpe15g00350 165 TIGRFAM gcvH: glycine cleavage system H protein 39 162 IPR017453 GO:0005960|GO:0019464
Cpe15g00350 165 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 81 110 IPR003016 -
Cpe15g00350 165 Gene3D - 30 161 - -
Cpe15g00350 165 SUPERFAMILY Single hybrid motif 37 160 IPR011053 -
Cpe15g00350 165 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 1 165 IPR002930 GO:0005960|GO:0019464
Cpe15g00350 165 ProSiteProfiles Biotinyl/lipoyl domain profile. 56 138 IPR000089 -
Cpe15g00350 165 CDD GCS_H 43 137 IPR033753 -
Cpe15g00350 165 Hamap Glycine cleavage system H protein [gcvH]. 38 159 IPR002930 GO:0005960|GO:0019464
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00350 K02437 gcvH, GCSH; glycine cleavage system H protein - csv:101222346 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00350 Cpe-Chr15:4719565 Cpe20g00618 Cpe-Chr20:3824910 1.02E-52 dispersed
Cpe15g00350 Cpe-Chr15:4719565 Cpe05g00195 Cpe-Chr5:1048994 2.18E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g655 . . . . . . . . . . Cma02g01600 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo19g00470 . . . . . Cpe15g00350 . . . . . . . Cla09g01154 Cam09g1214 Cec09g1236 Cco09g1257 . . Cre09g1175 . . . .
Vvi3g1052 . . . . . . . . . . . . . . . . Cpe15g00350 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001731 4 1 2 1 2 2 2 2 2 2 2 2 3 2 2 3 2 6 2 2 2 2 2 2 2 2 2 4 2 3 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00350 Cpe_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0