Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00356 ATGGATGCGACCTTCAAGCAAAACCCACTTCCATCTCCCGTCATAGACACTGTCAACGAAATCACTAGAATTTTCCGATCACTTCCGGCCAGACCCTCCATAGAAGAGGTCGAAGCAGCCGTGGCGATTCTCAATACTGTTCAGAACGACGAGGATTTCAAATTGGGGGAAATTTCAAAGCAGGAAGTCCCTCAAAATGTCCCTGAAGAGCTCTTCTCCATTTTGCAGCAGATGAGGAAGATGATGGTGTTGTTCGAGAGCCATGAACAGCGGCGAGAGGCCGTTCGTTTGATTGAGATCGATAAGATGCTGAAAACCTTCGATGAACTTATTCTGAGAGCTTCTGATTTGGTTTCTGGCGATTCTCAGGGCCAGAGGGCTCTGAATTTGAGTGATCCAGTTGAGAAAATTGCAAAGGAGACAGTAATCAGTGATCAAAATTTGGAGAAGAATAGGGGAGATGAAGAATTTGAAAGCAATGGAAATAAGGATTTGGTTAAGAATTCTTCATTCATTCCTCCATTATCTTCTTCAGGTGAAGGAGAAACTGAAAAACTGAGTTTAATGAAAGTTGCTGATCTTATTGAAAACATTGCTAAAAGTGGGTTAACTGTTCTGAATCTGAAGGGAAAGTTGATGGATAATATGGAATTTCTTCCAATTTCCATTGGGAAGTTATCTGTTCTTGTTGAATTAGACCTATCAGAAAACAAAATCATGGCACTTCCACCAGAACTAAGTAGCCTTAGATTGTTAACAAAGTTTGTCATTCACTCCAACCAATTAATAAACCTTCCTGGCACGTTCGGGGAGCTTGTAAACCTCACCGTCGTCGACCTGCACGCAAACCGGCTAAAATCACTGCCAGCTTCTTTTGGGAACCTGAAAAACCTTATTTCTCTCGACTTGAGTTCGAACCTTTTCACCCATTTACCAGAAATCGTTGGATCATTGACTAGTTTAAAGATGTTAAACGTAGAAACCAATGAGCTCGAGGACTTACCTTACACAATTGGATCATGTTCGTCACTTGTCGAGCTACGACTTGACTTTAACGAGATAAAATCTCTTCCCGAGGCAATCGGAAAGCTCGAATCGTTAGAGATTCTCACCCTGCATTACAATAGAATCAGAGGACTTCCCACAACAATAGGAAATCTCCCCAAGTTAAGGGAACTAGACATTAGCTTCAACGAACTGAAAACGATCCCTGAAAATCTGTGTTTCGCTGTTAGCCTCCAAAAGCTGAACGTCGGCAAGAACTTTGCCGACCTGACAGCGTTACCGAGATCGATCGGGAACCTGGAGATGCTCGAGGAGCTTGACATAAGTGCAGACCAGATACGATTCCTGCCGGAGTCTTTCAGGTTCTTATCGAAATTGAGAGTTCTCCAAGCGGATGAAACGCCATTAGAAGAACCACCAAGAGAAGTTATTGAATTGGGTGCTCAGGCTGTTGTGAAGTTCATGGCTGATGCAGTGGAAAAAGGGGACTTAAAATCTGAGGCAACAGAGGAGAAGGGGTTTTGGTTATGGTTTTGTTCATTATGTTGCTCCAAAACAAGTGATGCGCCTAATCACAGGTTATCTACTGAATTACAGCTTTGA 1608 42.79 MDATFKQNPLPSPVIDTVNEITRIFRSLPARPSIEEVEAAVAILNTVQNDEDFKLGEISKQEVPQNVPEELFSILQQMRKMMVLFESHEQRREAVRLIEIDKMLKTFDELILRASDLVSGDSQGQRALNLSDPVEKIAKETVISDQNLEKNRGDEEFESNGNKDLVKNSSFIPPLSSSGEGETEKLSLMKVADLIENIAKSGLTVLNLKGKLMDNMEFLPISIGKLSVLVELDLSENKIMALPPELSSLRLLTKFVIHSNQLINLPGTFGELVNLTVVDLHANRLKSLPASFGNLKNLISLDLSSNLFTHLPEIVGSLTSLKMLNVETNELEDLPYTIGSCSSLVELRLDFNEIKSLPEAIGKLESLEILTLHYNRIRGLPTTIGNLPKLRELDISFNELKTIPENLCFAVSLQKLNVGKNFADLTALPRSIGNLEMLEELDISADQIRFLPESFRFLSKLRVLQADETPLEEPPREVIELGAQAVVKFMADAVEKGDLKSEATEEKGFWLWFCSLCCSKTSDAPNHRLSTELQL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4767257 4770391 + Cp4.1LG15g03490.1 Cpe15g00356 481814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00356 535 MobiDBLite consensus disorder prediction 148 181 - -
Cpe15g00356 535 Pfam Leucine rich repeat 274 331 IPR001611 GO:0005515
Cpe15g00356 535 Pfam Leucine rich repeat 343 400 IPR001611 GO:0005515
Cpe15g00356 535 SUPERFAMILY L domain-like 200 471 - -
Cpe15g00356 535 MobiDBLite consensus disorder prediction 163 181 - -
Cpe15g00356 535 ProSiteProfiles Leucine-rich repeat profile. 389 410 IPR001611 GO:0005515
Cpe15g00356 535 PRINTS Leucine-rich repeat signature 229 242 - -
Cpe15g00356 535 PRINTS Leucine-rich repeat signature 387 400 - -
Cpe15g00356 535 MobiDBLite consensus disorder prediction 148 162 - -
Cpe15g00356 535 SMART LRR_typ_2 387 410 IPR003591 -
Cpe15g00356 535 SMART LRR_typ_2 226 249 IPR003591 -
Cpe15g00356 535 SMART LRR_typ_2 435 457 IPR003591 -
Cpe15g00356 535 SMART LRR_typ_2 342 363 IPR003591 -
Cpe15g00356 535 SMART LRR_typ_2 364 386 IPR003591 -
Cpe15g00356 535 SMART LRR_typ_2 272 294 IPR003591 -
Cpe15g00356 535 SMART LRR_typ_2 318 341 IPR003591 -
Cpe15g00356 535 SMART LRR_typ_2 295 317 IPR003591 -
Cpe15g00356 535 PANTHER LEUCINE-RICH REPEAT-CONTAINING 14 521 - -
Cpe15g00356 535 Gene3D Ribonuclease Inhibitor 176 496 IPR032675 -
Cpe15g00356 535 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 5 14 521 - -
Cpe15g00356 535 ProSiteProfiles Leucine-rich repeat profile. 297 318 IPR001611 GO:0005515
Cpe15g00356 535 SMART LRR_bac_2 295 314 - -
Cpe15g00356 535 SMART LRR_bac_2 410 431 - -
Cpe15g00356 535 SMART LRR_bac_2 272 291 - -
Cpe15g00356 535 SMART LRR_bac_2 387 406 - -
Cpe15g00356 535 SMART LRR_bac_2 364 383 - -
Cpe15g00356 535 SMART LRR_bac_2 341 360 - -
Cpe15g00356 535 SMART LRR_bac_2 318 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00356 - - - csv:101205841 900.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00720 Cpe-Chr10:4116532 Cpe15g00356 Cpe-Chr15:4767257 2.46E-143 dispersed
Cpe15g00356 Cpe-Chr15:4767257 Cpe19g00903 Cpe-Chr19:6566819 5.72E-142 dispersed
Cpe15g00356 Cpe-Chr15:4767257 Cpe05g00191 Cpe-Chr5:1027538 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g647 . . . . . . Bma07g00954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00105 . . . . . . . Cmo19g00475 . . . . . Cpe15g00356 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006201 2 1 3 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00356 Cpe_Chr15 FPKM 0.0 0.0 0.17363 0.0 0.0 0.0 0.328654 11.086679 6.770434 5.841709