Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00357 ATGCCACCGGTTCCTCTTGCACCATATCCAACACCTCCTGCACCTTATTCACAGCCTGCTAATGATCAGTGTTTGAAATGTGGATTTTGTTGGTCATTAGCCACACAGAGCCAGCTTGTGTGCTCAGGATGTAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGCGCCACGAGCGTTCAATGCTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCAAATCAGGTGGCACACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGGTATGACAACAAGTGCGATCGATCAAAAAGCTTAA 471 47.56 MPPVPLAPYPTPPAPYSQPANDQCLKCGFCWSLATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIGMTTSAIDQKA 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4775830 4778505 + Cp4.1LG15g03500.1 Cpe15g00357 481815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00357 156 PANTHER PROTEIN LOL1 3 153 - -
Cpe15g00357 156 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 77 106 IPR005735 -
Cpe15g00357 156 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 38 68 IPR005735 -
Cpe15g00357 156 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 115 144 IPR005735 -
Cpe15g00357 156 PANTHER PROTEIN LSD1 3 153 IPR040319 -
Cpe15g00357 156 Pfam LSD1 zinc finger 41 65 IPR005735 -
Cpe15g00357 156 Pfam LSD1 zinc finger 80 104 IPR005735 -
Cpe15g00357 156 Pfam LSD1 zinc finger 118 142 IPR005735 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00357 - - - csv:101221483 262.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00357 Cpe-Chr15:4775830 Cpe19g01192 Cpe-Chr19:7988530 8.62E-13 dispersed
Cpe15g00357 Cpe-Chr15:4775830 Cpe10g00032 Cpe-Chr10:226508 8.31E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g645 . . . . . . Bma07g00956 . . . . . . . . . . . . . . . . . Cla10g00174 Cam10g0175 Cec10g0183 Cco10g0184 Clacu10g0179 Cmu10g1026 Cre10g0431 . . . . . . . . . . . . . . . . . . Cmo19g00476 . . . . . Cpe15g00357 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003240 1 4 1 2 2 2 1 2 2 1 2 2 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 4 1 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50610 PF06943 zf-LSD1 9.90E-11 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00357 Cpe_Chr15 FPKM 3.460317 2.315611 1.33412 0.769672 6.702445 4.15926 5.292158 0.471837 0.571879 0.402465