Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00360 ATGCCAGTGGCTGCTTCCGCCATTTACTTCCTCAATCTCCGAGGGGATGTTCTCATTAATCGTCTCTACCGTGACGATGTCGGCGGAAATATGGTGGATGCCTTCCGAACACATATAATGCAAACAAAAGAACTTGGCACGTGCCCGGTGAGGCAGATTGGTGGTTGCTCTTTCTTTTACATGAGAATTAGCAATGTATACATTGTGATTGTTGTAAGCAGCAATGCAAATGTAGCTTGTGCATTCAAGTTCGTGGTTGAGGCTGTTGCACTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCAATTCGAAACAATTTTGTTCTTATTTACGAGCTTTTGGATGAAATAATGGATTTCGGTTACCCACAAAACCTCTCACCTGAAATTCTAAAACTATATATCACTCAGGAAGGAGTTCGCTCGCCATTCTCTTCCAAGCCTTCAGATAAACCTGTCCCAAATGCAACTTTACAAGTCACAGGTGCTGTCGGTTGGCGAAGGGAAGGCCTTGTATATAAAAAAAATGAGGTCTTTTTGGATATTGTTGAAAGTGTAAACCTTCTGATGTCTTCAAAAGGTAGCGTTCTACGTTGTGACGTTACCGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATCTAAAGTTGGGTTTAAATGATAAGATTGGACTTGAGAAAGAGTCGCAAATGAAGTCCCGTCCAAATAAGAGTGGTAAAACAATTGAGCTTGATGATGTTACTTTTCATCAATGTGTAAATTTGACGAGGTTTAACTCGGAGAAGACGGTCAGCTTTGTGCCACCCGATGGCGAATTTGAATTGATGAAATATCGTATTACTGAGGGTGTTAATCTTCCATTTCGAGTACTCCCAACAATTAAGGAGCTTGGTAGGACACATATGGAAGTTAATGTTAAGGTGAAGAGTGTCTTCGGTGCGAAAATGTTTGCTCTTGGCGTGGTCATTAAAATTCCCGTTCCAAAGCAGACAGCTAAAACTAGTTTCCAAGTGACATCCGGTCGAGCCAAGTACAATGCCTCGATCGACTGCATTGTGTGGAAGATCAGAAAATTCCCTGGACAAACGGAACCAACCATGAGCGCAGAAGTCGAGCTGATTTCTACGATAACTGAAAGGAAGGCTTGGACACGGCCACCAATTCAGATGGAGTTTCAGGTGTGGGAGAAGAGTGGTTACAACACAGTCGAATGGGTTCGTTACATAACTAAAGCTGGATCGTACGAGATCCGATGTTAG 1272 42.53 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQMKSRPNKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTHMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCIVWKIRKFPGQTEPTMSAEVELISTITERKAWTRPPIQMEFQVWEKSGYNTVEWVRYITKAGSYEIRC 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4791150 4799015 - Cp4.1LG15g03560.1 Cpe15g00360 481818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00360 423 Gene3D - 5 145 - -
Cpe15g00360 423 PANTHER BNAA02G36830D PROTEIN 3 423 - -
Cpe15g00360 423 ProSiteProfiles Mu homology domain (MHD) profile. 177 423 IPR028565 -
Cpe15g00360 423 PIRSF AP_complex_mu 4 423 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe15g00360 423 PANTHER AP COMPLEX SUBUNIT MU 3 423 - -
Cpe15g00360 423 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 166 422 IPR036168 -
Cpe15g00360 423 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 166 186 IPR018240 GO:0006886|GO:0016192|GO:0030131
Cpe15g00360 423 PRINTS Clathrin coat assembly protein signature 168 196 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe15g00360 423 PRINTS Clathrin coat assembly protein signature 248 275 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe15g00360 423 PRINTS Clathrin coat assembly protein signature 102 129 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe15g00360 423 PRINTS Clathrin coat assembly protein signature 357 368 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe15g00360 423 PRINTS Clathrin coat assembly protein signature 317 332 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe15g00360 423 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe15g00360 423 CDD AP-2_Mu2_Cterm 175 422 IPR043512 -
Cpe15g00360 423 Gene3D Mu homology domain, subdomain B 290 420 - -
Cpe15g00360 423 Pfam Adaptor complexes medium subunit family 167 423 IPR028565 -
Cpe15g00360 423 Gene3D Mu homology domain, subdomain B 168 418 - -
Cpe15g00360 423 CDD AP2_Mu_N 6 144 IPR043532 -
Cpe15g00360 423 SUPERFAMILY SNARE-like 6 142 IPR011012 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00360 K11826 AP2M1; AP-2 complex subunit mu-1 - csv:101220779 811.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00188 Cpe15g00360 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00105 Cpe-Chr2:527833 Cpe15g00360 Cpe-Chr15:4791150 3.00E-59 dispersed
Cpe05g00188 Cpe-Chr5:1009065 Cpe15g00360 Cpe-Chr15:4791150 0 dispersed
Cpe06g00094 Cpe-Chr6:459303 Cpe15g00360 Cpe-Chr15:4791150 1.57E-53 dispersed
Cpe09g00520 Cpe-Chr9:3495633 Cpe15g00360 Cpe-Chr15:4791150 1.26E-100 dispersed
Cpe15g00360 Cpe-Chr15:4791150 Cpe18g00013 Cpe-Chr18:263148 1.14E-38 dispersed
Cpe15g00360 Cpe-Chr15:4791150 Cpe05g00186 Cpe-Chr5:981301 2.13E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g638 Blo02g00997 . . . Bpe05g00534 . . . . . . . . . . . Cpe05g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00385 . . . Cmo19g00479 . . . . . Cpe15g00360 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004704 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00360 Cpe_Chr15 FPKM 13.65523 13.547192 13.652474 14.830268 10.896254 10.770802 9.475045 19.65654 18.31682 19.74263