Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00364 ATGGACATCTCCTTGGCGGCAATGGACGACTCTGCAACCAGTCCCGTCAAGGCCTTGGCTTCGTTTCTAATTCGCCGCCACTCCGATCAGCTTCTTTCCATTGCTCACTCCCCTGATCCTAAGCTCCATTACCCTCTATTCGTGGAATTCGCAGAGCTGATGGACGACGATCCACCTCTTGCTCGTCTTGTTTTCTCCCATCCGACTGAGTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATAAGATCACTTTGGGTGATTCGAAAGGTTGTATAAATGGAATTAAGAAAGATTTCATCCATGTTCGCATTAATGTCGCCGGCTCCCCTCTGGAATGGCCTGAGACTTCTCCAAGTATTGGGTCTATCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACGGTAATCAGATCTGGGGCAATTAAGATGTATGAGGGGGAGAGGTGGTACATTTGCCGGAAATGCAAGCACAAGTTCCCAGTATATCCCGAGCTGGAAACCAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGGCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTAGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGATCCATTCCTCGTGCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGACGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACATCAAAGATGTACGGTGTGACCTTGATCCAATGCTAATTGCTAATCATGTGAGAAGAACCAATGAACTGAAGGCAGAGGTTGACATCCCTGATGACATAATTATGAACTTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGTAGAAATGCTATTCTAAGAGGTATTTGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATGTATCTGGTACCAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGCGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAACTGAGCAACCGGGCTGTTATTACCACTGGATTAGGAAGCACTAGCGCTGGACTGACTGTTGCTGCTGTCAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGTATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGCGTCGCAAAGGCTGGTCTTGTAACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTATGACCCTGAACAACCTCTCTCTGTCAATACAACACTCTCCGGACCCTTATTGAGCAGATTTGATATCGTCCTTGTGCTTTTAGATACCAAAAATCCCGAATGGGATGCAGTTGTTTCATCACATATTCTCTCCGAGTGCCAACAAGAAAAGGGAAAGCGTGATAATGATCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACCTCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACCAAGGAGGCTGAACAAATTATTTCAAGCTACTATCAGCTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGGACAACGGTCCGCATGCTTGAAAGTTTGATACGTTTAGCACAAGCACATGCACGGCTCATGTTTAGAAATGAGGTTACTCGGCTCGATGCCATTACGGCTATTTTGTGCATCGAATCATCCATGACGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATATGCAAAGCAAGAAATTTTGATCCTTGAGAAGCTCAAGTTACTGCGAAGAGATTATTTGGAGTTAACTAAT 1998 44.64 MDISLAAMDDSATSPVKALASFLIRRHSDQLLSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSHPTEYLRIFDDAAVWAHKITLGDSKGCINGIKKDFIHVRINVAGSPLEWPETSPSIGSIRVKHRGVLLTLKGTVIRSGAIKMYEGERWYICRKCKHKFPVYPELETRNSIQLPSFCPSQRAKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRAILVILKDDLVDLVKAGDDVIVTGVLSAKWSPDIKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMNFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDVSGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSECQQEKGKRDNDLSSNWPLTMLRRYLQFVKGYFRPVLTKEAEQIISSYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSALVDSVGNALHSNFTENPDEEYAKQEILILEKLKLLRRDYLELTN 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4833021 4865442 + Cp4.1LG15g03640.1 Cpe15g00364 481822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00364 666 Gene3D - 149 205 - -
Cpe15g00364 666 PRINTS Mini-chromosome maintenance (MCM) protein family signature 409 423 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00364 666 PRINTS Mini-chromosome maintenance (MCM) protein family signature 351 366 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00364 666 PRINTS Mini-chromosome maintenance (MCM) protein family signature 487 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00364 666 PRINTS Mini-chromosome maintenance (MCM) protein family signature 437 450 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00364 666 PRINTS Mini-chromosome maintenance (MCM) protein family signature 460 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00364 666 SMART mcm 118 619 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe15g00364 666 SUPERFAMILY Nucleic acid-binding proteins 43 260 IPR012340 -
Cpe15g00364 666 Gene3D - 295 623 IPR027417 -
Cpe15g00364 666 Gene3D - 124 254 IPR012340 -
Cpe15g00364 666 SMART AAA_5 352 501 IPR003593 -
Cpe15g00364 666 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 43 656 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe15g00364 666 PANTHER DNA HELICASE MCM9 43 656 - -
Cpe15g00364 666 Pfam MCM AAA-lid domain 536 617 IPR041562 -
Cpe15g00364 666 ProSiteProfiles MCM family domain profile. 310 513 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00364 666 CDD MCM9 313 617 - -
Cpe15g00364 666 Pfam MCM OB domain 124 254 IPR033762 -
Cpe15g00364 666 Pfam MCM P-loop domain 312 515 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00364 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 621 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00364 Cpe-Chr15:4833021 Cpe19g01218 Cpe-Chr19:8191358 1.50E-71 dispersed
Cpe15g00364 Cpe-Chr15:4833021 Cpe15g00556 Cpe-Chr15:6397771 5.50E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00364 K10738 - csv:101205171 1198.34