Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00366 ATGGATTTCCTCTCTTCCAGAAAGCTTCTCTCCGACGACGCCGACGAAGACCTCAACAAATTCTGCCCTGAATACTGCCTCGATCACCCTTCCGATTCCTGCTCCTCCGATTGCCTCGAAAAATGCCCTACACTCTGTTCTTACATCTCTACTTCAATCCCGCCGCCCGATTTTGACGATTTCAATCTCTCCTCCGCCGCCAAATCGCCGCATAAACTCTCCAATTTGGTTACCTTAACCATCGCTCTCCTCTCTTTTACCTTCCTCCTCGTCCTCTGCTACGCCGTCTACGCCCGTTTCTACTCCGCCCGCCGTAGACAGATCCGCCGCCTCGATTCCCCACCGCCCCCAACCCACCACCTCCACCACCACGGCCCTGTTTTGGATCACCCCATTTGGTATATCCGTACCATCGGCCTCCCGCCGGCTGTTATCGACACCATCGCCGTCTGCAAATTCAAATCCGGCGAGGGTTTGATCGACGGAACAGAGTGCTCTGTTTGTTTAAGCGAATTCGAAGAGGATGAAACTTTAAGACTCTTGCCAAAATGTAGCCACGCTTTTCATCTCCCCTGTATCGATACTTGGCTTCGATCCCACACCAATTGCCCCATGTGCCGCGCTCCCGTCGTAGCTCACTCCGCTCCACCGACACCGACACCGCCTCCGGCCGAAACCCAGATGGCGAATTTACAGGAGGAAGAAGAAAACGCCGCCAATTCAGGGGAAAATTCCACGAGAAACGAAGAACAAGATGAAATCCATTTAGAAAGTGACAATCAGGCGATGAGAAGATCGGTGTCTTTAGATTTGCCCTCTGCTCTTCAAATCAGCTCTGTTCTTGGTGTTGTTAATGAAAAAATGGATTGGGAAGGTGAATCGGAGCAGAGAAATGGGAATTTCTCGGAGAAATCAGAGGGGAGTATGAACAGGTCAGTTTCTTGCAGTGGGGGGTTTCTGATGAGAAGCTCCAATCATAGTTGA 984 51.22 MDFLSSRKLLSDDADEDLNKFCPEYCLDHPSDSCSSDCLEKCPTLCSYISTSIPPPDFDDFNLSSAAKSPHKLSNLVTLTIALLSFTFLLVLCYAVYARFYSARRRQIRRLDSPPPPTHHLHHHGPVLDHPIWYIRTIGLPPAVIDTIAVCKFKSGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLRSHTNCPMCRAPVVAHSAPPTPTPPPAETQMANLQEEEENAANSGENSTRNEEQDEIHLESDNQAMRRSVSLDLPSALQISSVLGVVNEKMDWEGESEQRNGNFSEKSEGSMNRSVSCSGGFLMRSSNHS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4874155 4875138 + Cp4.1LG15g03610.1 Cpe15g00366 481824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00366 327 MobiDBLite consensus disorder prediction 233 254 - -
Cpe15g00366 327 MobiDBLite consensus disorder prediction 301 327 - -
Cpe15g00366 327 CDD RING-H2_PA-TM-RING 164 207 - -
Cpe15g00366 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 214 IPR013083 -
Cpe15g00366 327 Pfam Ring finger domain 164 207 IPR001841 -
Cpe15g00366 327 PANTHER RING-H2 FINGER PROTEIN ATL54 31 312 - -
Cpe15g00366 327 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 31 312 IPR044675 -
Cpe15g00366 327 SUPERFAMILY RING/U-box 159 213 - -
Cpe15g00366 327 SMART ring_2 165 206 IPR001841 -
Cpe15g00366 327 MobiDBLite consensus disorder prediction 290 327 - -
Cpe15g00366 327 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00366 - - - cmo:103495376 409.453
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00372 Cpe15g00366 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00366 Cpe-Chr15:4874155 Cpe17g00262 Cpe-Chr17:1731918 1.93E-36 dispersed
Cpe11g00454 Cpe-Chr11:2562752 Cpe15g00366 Cpe-Chr15:4874155 7.33E-44 wgd
Cpe15g00366 Cpe-Chr15:4874155 Cpe04g00372 Cpe-Chr4:4386496 3.42E-124 wgd
Cpe15g00366 Cpe-Chr15:4874155 Cpe05g00173 Cpe-Chr5:912739 2.34E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g981 . . . . . . . . . Cmo11g01477 . . . . Sed10g1872 Cpe04g00372 Cpe15g00366 Bhi05g00901 Tan02g1189 Cmetu01g2487 Lac12g0060 Hepe02g0730 . . . . . . . . . . . . . Lsi03g00730 . . . . . Bda15g00493 . . . . . . . . Cma11g01659 Cma19g00468 Car11g01180 Car19g00344 . . . . . . . . . Cla09g01565 Cam09g1596 Cec09g1718 Cco09g1775 . . Cre09g1612 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011597 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00366 Cpe_Chr15 FPKM 6.00544 7.51256 9.417611 8.74367 18.120197 17.345419 19.22715 10.184253 11.44744 11.081627