Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00387 ATGAATCTCTCCATAGCTCTCGTGTGCGAGTGTGCTCGTCTTCAATCGGCGCCGGAGAAAAATGTTGCAGTTCTCGATTCGGCGAGGTACGGGTACGAAAATGTGCTTTTGTTTATAGGCAAGGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGAGGAATTTAAAGCTGCAGTATCTGCAGCAATGCAGGCATTTCCTGCTTGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGGTCAAGCTTCAAGAACTCGTTAGGCGAGATATCGACAAACTTGCTCTAAATTTTACAACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATCCCGTGGGATAGAGGTTGTGGAACATGCATGTGGAATATGCATCGCTGCAAATGGGGTAGATGTTGTTAATGCCATTTGTGACGATGAAGATATAAAGGCAATATCATTCGTTGGTTCAAACATTGTAAGGTATCTTTACTGA 486 42.18 MNLSIALVCECARLQSAPEKNVAVLDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKLQELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVNAICDDEDIKAISFVGSNIVRYLY 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5089964 5092328 - Cp4.1LG15g03880.1 Cpe15g00387 481845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00387 161 SUPERFAMILY ALDH-like 41 155 IPR016161 GO:0016491
Cpe15g00387 161 Pfam Aldehyde dehydrogenase family 41 128 IPR015590 GO:0016491
Cpe15g00387 161 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 33 134 IPR016162 GO:0016491
Cpe15g00387 161 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 39 128 IPR010061 GO:0004491
Cpe15g00387 161 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 133 157 IPR010061 GO:0004491
Cpe15g00387 161 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 39 128 - -
Cpe15g00387 161 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 133 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00387 K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] - csv:101204924 160.999
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00387 Cpe-Chr15:5089964 Cpe16g00704 Cpe-Chr16:7228718 2.52E-08 dispersed
Cpe15g00387 Cpe-Chr15:5089964 Cpe04g00361 Cpe-Chr4:4234773 3.70E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g890 Blo02g00869 . . . . . . Bma12g00367 . . . . . . . . Cpe15g00387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00387 Cpe_Chr15 FPKM 16.889612 19.032303 43.916492 43.042351 46.536289 42.002045 47.470264 33.16975 33.648758 35.880871