Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00398 ATGACAAATGTTTCTCAAATTGGGTGTGTTGGAGTTACGAGTTTAGGCAATATGTTGGAGCCGATTAGTTGCTGCCAGAGCTCCCACTCCCAGATTTATAGTGCAGTTAAACAGAAGAATTCTTTCATGGCCTACTCTCATACTGTTCATCAACATTGTGGCTCTTCCTTCAACTTACATTATCCACACTCGAAAGTCGCCGTTCCATCATGCACCATAAATTGCTGGAGGAATGGTTATTCTTTAGTCCACAGCAGTACTGCTACGGTAACGTTCAAAGTAGTTGGACCGAATGGATACAGTTGGTTTAATCATAGGCCTAAATGGAGGGAAAGATTAAGAACGCGTGCAGCGCTTGATGTTGCAGCTGCTGTAGATGTCATCAATGATTTAGGATTGGATACATTGACATTCCTAGCTGTGACTGTCGTAGTTGTTCCTCTATTTAGGAGAATTAAGGCTAGCCCTATACTCGGTTTCTTCTTCGCTGGGATTGTACTTAATCAACTTGGCGTGATTAGAAATATTGTAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTGTTTGAGATGGGTTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCGCGGTTTGCTTTTGGCATGGGTTTGACACAGGTCATATTATCTACTATCGCTTTCACTGCATTTGAACTTCCTCCTAATGGGGCTATTGGTACAAAAATTTTGGTGTTCCTTTTTCACGCCAGACCCGACTTGGTTAACATCAGAAGCATTGATGAAGCTGTTGTGATTGGTGCAGCTCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTCGCGACAAGATTTGGCTCGGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCCTGGTCATACTTCCCGTCCTCGAGAGCCAGAATTTGGGCACGGAAAGTATCTGGCCGATGCTTGCACAAGAAAGTTTGAAGGCTTTAGGTGGCCTGGGTCTGCTGTCCCTTGGAGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTCGCGGAAGCAAGAAGCTCAGAGGCTTTTGTGGCCCTTTGCCTACTGACTGTTGCTGGCACTTCGCTAATCACTCAGAAATTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCAATATTAGCAGAAACAAACTTCCGGACACAGATTGAAGCAGATATTCGGCCATTCCGGGGCTTGCTCCTTGGGTTATTCTTCGTTACCACAGGGACCTCGATCGATATCCAGCTCCTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCCCGTGTCGGCCTCAGTACTCAAGAAAGCGTAAGAATAGGCTTTCTTCTATCTCAAGGAGGCGAGTTCGGATTTGTAGTGCTTGGAGTGCTACCACTCGAGTTAAACAAGCTGCTCATCATTATTGTTGTGTTGTCAATGGCTTTAACTCCCTTGCTTAATGAAGCTGGACGAAAAGCATCTGAATTCATCAGTGAAAACTACAAGACAGAGGATGTCCTAGCTAATTTCTTATCTACACCTTTGGTATCCGGGGCAGATCGCAATACTCCCGGATGGCCATATGTCGCATTCGACATTGATCTTTCCGTCGTGAAGACGTCTAGAAAGCTCGGTTTTCCTGTTCTCTATGGAGACGGATCACGACCAGCAGTTTTGCAATCAGCTGGAATCTCTTCTCCAAAAGCTGTCATGGTTATGTTCACAGAGAAGAAGGCGACAATCGAGGCTGTTCAAAAGCTTCGGCTTGCTTTCCCAGCTATCCCAATTTACGCCCGAGCAAAAGACGTGGTGCATCTATTAGACTTAAAGAACGCAGGTGCGACGGATGCTATTTTGGAAGACGCTGAGACTAGTTTACAACTCGGGTCAAAGCTTTTGAAAGGGCTCGGCGTCATGTCTGATCAAGTGTCTTTTCTCAGTCGGATGATACGCGTCAAGGACTCGATCGAGTCCCCAGAGAACGAACTGTCGAGGCTGAACCGGGAAGATAATACTCGGATCTTAAACGGAAAAGAGGTGGATCAAATGAAGCAAGATGAAGATCTAGACGGAAAGGGAGTTCTGTACTGTGAACTTGATACAGACAACAACCGCTTTGATGACAGATAG 2217 45.15 MTNVSQIGCVGVTSLGNMLEPISCCQSSHSQIYSAVKQKNSFMAYSHTVHQHCGSSFNLHYPHSKVAVPSCTINCWRNGYSLVHSSTATVTFKVVGPNGYSWFNHRPKWRERLRTRAALDVAAAVDVINDLGLDTLTFLAVTVVVVPLFRRIKASPILGFFFAGIVLNQLGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPPNGAIGTKILVFLFHARPDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDIQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLSTQESVRIGFLLSQGGEFGFVVLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISENYKTEDVLANFLSTPLVSGADRNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIEAVQKLRLAFPAIPIYARAKDVVHLLDLKNAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSRMIRVKDSIESPENELSRLNREDNTRILNGKEVDQMKQDEDLDGKGVLYCELDTDNNRFDDR 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5172010 5182539 + Cp4.1LG15g03940.1 Cpe15g00398 481856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00398 738 Pfam Sodium/hydrogen exchanger family 138 516 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cpe15g00398 738 Gene3D - 531 668 - -
Cpe15g00398 738 ProSiteProfiles RCK N-terminal domain profile. 531 655 IPR003148 GO:0006813
Cpe15g00398 738 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 554 661 IPR036291 -
Cpe15g00398 738 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 101 690 - -
Cpe15g00398 738 Gene3D - 130 524 IPR038770 -
Cpe15g00398 738 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 101 690 - -
Cpe15g00398 738 Pfam TrkA-N domain 552 647 IPR003148 GO:0006813
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00524 Cpe-Chr8:3388541 Cpe15g00398 Cpe-Chr15:5172010 3.05E-67 dispersed
Cpe15g00398 Cpe-Chr15:5172010 Cpe09g00132 Cpe-Chr9:780925 9.71E-23 dispersed
Cpe15g00398 Cpe-Chr15:5172010 Cpe04g00356 Cpe-Chr4:4207737 0 wgd
Cpe15g00398 Cpe-Chr15:5172010 Cpe07g00557 Cpe-Chr7:3691795 3.81E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00398 - - csv:101209266 1131.7