Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00405 ATGGCTTCGTCTGAGATTGAGGTTGTAGCATCACCCAACTCGAAATCTCAGACAAACCCTGAAGTTGCCATTGTAGACGTTTACTCTGCTTCTGCTTATGGCGACTTCCAGAAAGTGAGGAGTTTCGTTGAAGAGCATGGAGCTTCTGTTTTGGTTCCTGATTCCAACGGGTACTATGCTTTGCAATGGGCTGCTTTAAACAACTTCCCTGATATCGTCCAGTACATCATTGAGTTCCCTACCAAAGTTTTTGATGATTGTTTTCGTCAGCATGGAGCGGATGTCAATTCCTGTGACAAATTGCAGCAGACAGCGCTTCACTGGGCAGCAGTTCGAGGTTCAATTATGGCTGCGGATGTACTCCTGCTGAATGGAGCTCGAGTGGAGGCAGCTGATATAAATGGGTATCGGGCAGTTCATGTTGCTGCTCAATATGGACAGACTGCATTCTTGAATCACATTGTTGCCAAATTCCACGCTGACTTTGACGTTCCAGATAATGAAGGGAGGAGTCCTCTTCATTGGGCTGCATACAAAGGATTTGCAGATACAATTAGACTTCTTTTATTCAGAGATGCAAGCCAAGGAAGACAAGATAAAGAAGGTTGTACCCCTGTGCATTGGGCTGCATTAAGTGGAAATGTGGAGGCATGTACTGTTCTTGTGCATGCCGGAACAAAGCAAGAATTGTTGATCAAAGACAATGCCGGTTATACTCCTTTCCAGCTTGCATCTGATAAAGGTCATCGGCAAATTGCTAATTTCCTTTCTAAAGCACAACCGACACATCACAGCCACTTTGGAGCAAAATTTTGCTCTAATCTTGCGAAGGTTACTGCTGTTGTTGGACTTTGGGCATGGGCGGCCCTCTGTTTGACATTTGTTGCTATGATAATGTTTTATACGTGTAGTAGGTTCCCTTTATATGTTACCATGCCAACTGCCATAACGATTTTTGGATCAACAGCAATGATATCGGTTCCTAGTGAGGATACAATACTCAAGGATCCAGGCTACATAAAAAGACCCGGGGAGTTGGGCAATCCTGCCAATACAGAGGATCCTTTGTTGAGCATTGATCTCAACAATTCTTCAGTATGGATGGGGAATTGGTCTCAACTATGCCCCACTTGCAAGATAATTAGACCCGTTCGTTCGAAGCACTGTCCTACTTGTAATCGATGTGTGGAACAGTTTGACCACCACTGCCCGTGGATATCTAATTGTGTGGGGAAGCGGAATAAACGGGATTTTTTTGTCTTCGTCTGTTTGGGAACTTTGACATCACTCCTTGCTGGCTGTATTGCCATAAAAAGAATCTATGAAGTGCCTTCAGCATTGCAAACCGGAGAAACTTGGTTTCTTCATGTGGTAGTTCATTATCCCGGAGTCGTTATATTTCTTTTTCTGGACGGTATCATATTTTTGGCTGCCACAACTTTGACCGTGGCTCAGGCATCTCAGGACCTGGCTACAGTACCATCTTCTTTGAATGTGCAAACGGAAGCCAAGGAGATTGGTGAACGTATTGCCGAACTTCACAAAGAGGTTCACGACCATTTGGAGATAGCACGAAATATCACCACTAACGAAGTGTCAAATGCCATTCGCTATGGATATCTTCGTGGTCCAGATGGGAAATTTCGGAATCCATATAACCATGGATGTCGAAAGAATTGCTCTGATTTCCTCATTCATGGCTATATAGACGACGAGATCGCTTGGCCTCCACTACAGCGTGCTGCCAGTTAG 1752 44.46 MASSEIEVVASPNSKSQTNPEVAIVDVYSASAYGDFQKVRSFVEEHGASVLVPDSNGYYALQWAALNNFPDIVQYIIEFPTKVFDDCFRQHGADVNSCDKLQQTALHWAAVRGSIMAADVLLLNGARVEAADINGYRAVHVAAQYGQTAFLNHIVAKFHADFDVPDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKEGCTPVHWAALSGNVEACTVLVHAGTKQELLIKDNAGYTPFQLASDKGHRQIANFLSKAQPTHHSHFGAKFCSNLAKVTAVVGLWAWAALCLTFVAMIMFYTCSRFPLYVTMPTAITIFGSTAMISVPSEDTILKDPGYIKRPGELGNPANTEDPLLSIDLNNSSVWMGNWSQLCPTCKIIRPVRSKHCPTCNRCVEQFDHHCPWISNCVGKRNKRDFFVFVCLGTLTSLLAGCIAIKRIYEVPSALQTGETWFLHVVVHYPGVVIFLFLDGIIFLAATTLTVAQASQDLATVPSSLNVQTEAKEIGERIAELHKEVHDHLEIARNITTNEVSNAIRYGYLRGPDGKFRNPYNHGCRKNCSDFLIHGYIDDEIAWPPLQRAAS 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5220505 5228586 + Cp4.1LG15g04110.1 Cpe15g00405 481863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00405 583 ProSiteProfiles Ankyrin repeat profile. 201 225 IPR002110 GO:0005515
Cpe15g00405 583 Pfam Ankyrin repeats (3 copies) 199 259 IPR002110 GO:0005515
Cpe15g00405 583 Pfam Ankyrin repeats (3 copies) 121 197 IPR002110 GO:0005515
Cpe15g00405 583 Gene3D - 5 281 IPR036770 -
Cpe15g00405 583 PANTHER - 3 488 - -
Cpe15g00405 583 PANTHER - 519 571 - -
Cpe15g00405 583 SUPERFAMILY Ankyrin repeat 29 258 IPR036770 -
Cpe15g00405 583 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Cpe15g00405 583 ProSiteProfiles Ankyrin repeat region circular profile. 201 225 - -
Cpe15g00405 583 Pfam DHHC palmitoyltransferase 373 484 IPR001594 GO:0016409
Cpe15g00405 583 ProSiteProfiles Ankyrin repeat region circular profile. 168 194 - -
Cpe15g00405 583 PANTHER PROTEIN S-ACYLTRANSFERASE 24 3 488 - -
Cpe15g00405 583 PANTHER PROTEIN S-ACYLTRANSFERASE 24 519 571 - -
Cpe15g00405 583 ProSiteProfiles Ankyrin repeat profile. 168 200 IPR002110 GO:0005515
Cpe15g00405 583 ProSiteProfiles Ankyrin repeat region circular profile. 101 132 - -
Cpe15g00405 583 SMART ANK_2a 236 265 IPR002110 GO:0005515
Cpe15g00405 583 SMART ANK_2a 56 85 IPR002110 GO:0005515
Cpe15g00405 583 SMART ANK_2a 168 197 IPR002110 GO:0005515
Cpe15g00405 583 SMART ANK_2a 201 230 IPR002110 GO:0005515
Cpe15g00405 583 SMART ANK_2a 134 164 IPR002110 GO:0005515
Cpe15g00405 583 SMART ANK_2a 101 130 IPR002110 GO:0005515
Cpe15g00405 583 ProSiteProfiles DHHC domain profile. 373 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00405 K20032 ZDHHC13_17, HIP14; palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] - csv:101206919 911.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01038 Cpe-Chr11:8719781 Cpe15g00405 Cpe-Chr15:5220505 4.57E-172 dispersed
Cpe15g00405 Cpe-Chr15:5220505 Cpe08g00819 Cpe-Chr8:6531215 1.10E-16 dispersed
Cpe15g00405 Cpe-Chr15:5220505 Cpe07g01127 Cpe-Chr7:9909559 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g828 . . . . . . . . Cmo19g00523 . . . . . . . Cpe15g00405 Bhi05g00980 Tan02g1093 . Lac12g0121 . . . Cla02g00732 Cam02g0777 Cec02g0776 Cco02g0805 Clacu02g0772 Cmu02g0765 Cre02g1079 Cone12ag1016 Cone8ag1045 . . Lsi03g00647 . . . . . . . . . . . . . . . Cma19g00510 . Car19g00384 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006934 1 4 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00405 Cpe_Chr15 FPKM 6.973637 8.031953 11.233841 12.200698 8.871877 8.409243 10.259542 15.631838 14.249751 16.248842