Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00409 ATGGAGAGATCATCTATGGTGGTTTTTTCTGAGATGGGAATGGAGGACAATGGCTTTGTCAATCAGTGGCAGAAGAGCTCAATAGATGAGCTTGGCGTCCCATTAGCAGCAGCTTTTGGGGAGGATTTGCAGCATTCTTATGCTCAGTCAAACATCGATCAGAAGGCTTCTTTAAACCGTTCTCACAACGCCATACTCGGGTATGTGAAACAGCTCAAGAGTGATGGATGGAGTTCGTATCAAACGAATAATCATTCGTCAAACTCACCAGTCGTTTCGTATCCGACCGCGTCTGTTTCGGCTTCCAACTACACGAACCAAATGGACTTCACGAGGCCAAAAGAGGAGGTCGTGTGTCCTCGGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGACACATTACGCCACACGAGCCATGGAACGAAAAGTACCTCTACAAACAGTAGAATCCCACAGGCTCAAGATCATATTCTTGCAGAGCGGAAACGTCGAGAGAAGCTTAACCAGCGGTTTATCGCTTTGTCTGCTATAGTTCCCGATCTAAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATTAAGTACCTGAAACAGCTCCAAGAGAGAGTGAAGATACTGGAGGAACAAACCCGCAGGAAAGACATCGAATCCGTGGTATTCATCAACACATCAAACGAGGACGACGACCCACTTCCCGAGATCGAAGCAAGATTATGCGACAAAAACGTCCACAGTTGCTGA 753 46.61 MERSSMVVFSEMGMEDNGFVNQWQKSSIDELGVPLAAAFGEDLQHSYAQSNIDQKASLNRSHNAILGYVKQLKSDGWSSYQTNNHSSNSPVVSYPTASVSASNYTNQMDFTRPKEEVVCPRSISNLPSDMLVSQDTLRHTSHGTKSTSTNSRIPQAQDHILAERKRREKLNQRFIALSAIVPDLKKMDKASVLGDAIKYLKQLQERVKILEEQTRRKDIESVVFINTSNEDDDPLPEIEARLCDKNVHSC 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5241709 5244982 + Cp4.1LG15g04040.1 Cpe15g00409 481867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00409 250 PANTHER BHLH TRANSCRIPTION FACTOR 4 247 - -
Cpe15g00409 250 CDD bHLH_AtNAI1_like 156 228 - -
Cpe15g00409 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 217 IPR036638 GO:0046983
Cpe15g00409 250 SMART finulus 160 209 IPR011598 GO:0046983
Cpe15g00409 250 Coils Coil 193 220 - -
Cpe15g00409 250 Gene3D - 151 219 IPR036638 GO:0046983
Cpe15g00409 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Cpe15g00409 250 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Cpe15g00409 250 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 4 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00409 - - - csv:101209844 389.808
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00344 Cpe15g00409 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00517 Cpe-Chr10:3034203 Cpe15g00409 Cpe-Chr15:5241709 1.95E-32 dispersed
Cpe15g00409 Cpe-Chr15:5241709 Cpe19g00712 Cpe-Chr19:5559444 4.45E-11 dispersed
Cpe15g00409 Cpe-Chr15:5241709 Cpe04g00344 Cpe-Chr4:4145872 9.53E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g826 . . . . . . . . Cmo19g00526 Cmo11g01441 . . . . Sed10g1926 Cpe04g00344 Cpe15g00409 Bhi05g00987 Tan02g1087 Cmetu01g1268 Lac12g0126 Hepe02g0676 . . Cla02g00729 Cam02g0775 Cec02g0773 Cco02g0802 Clacu02g0770 Cmu02g0763 Cre02g1077 . Cone8ag1047 . . Lsi03g00644 Csa07g00647 . Cme01g00155 . . . . . . . . . . . . Cma19g00513 Car11g01157 Car19g00388 . . . . . . . . . . . . . . . . . . Chy01g00164 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000301 3 5 4 3 4 4 5 4 4 4 4 4 5 4 4 7 4 9 5 4 4 5 3 5 5 4 4 11 7 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50612 PF00010 HLH 3.00E-12 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00409 Cpe_Chr15 FPKM 36.828949 35.930115 27.259331 30.206539 6.513227 6.158072 6.071572 62.364334 64.745285 71.336853