Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00420 ATGGATCTTTTCAAGCTCTCCCTCTCCCTCTTCTATGTCGGCTTGAGCTTTGCCATGTTTCGTTCCTCTCTCGCTCAAGACTCGCCTCAAGACTTTGTCAATGCCCACAATGCAGCTCGTGCCCAAGTTGGCGTTGGGCCAGTCCAGTGGGACGAAAGGGTAGCTAGTTTTGCTCGACAATATGCCAACCAACGCATCAATGACTGTCGATTGGTGCACTCAGGTGGACCATATGGGGAAAATATTGCATGGGGTAGCCCTGACTTGTCAGGGACTAATGCTGTTCGGATGTGGGTTGATGAGAAACAATTCTACAATCCTAGCGCTAATACTTGTGCAGCTGGCAAGGTGTGTGGCCATTACACTCAAGTGGTGTGGAGAAACTCGGTGAGAATTGGATGTGCTAAAGTGAGATGCACAAACAATCGTGGTACATTCATCATTTGCAACTATGATCCACGTGGCAATATCATAGGCCAAAGGCCATTCTAA 492 48.17 MDLFKLSLSLFYVGLSFAMFRSSLAQDSPQDFVNAHNAARAQVGVGPVQWDERVASFARQYANQRINDCRLVHSGGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSANTCAAGKVCGHYTQVVWRNSVRIGCAKVRCTNNRGTFIICNYDPRGNIIGQRPF 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5346921 5347412 + Cp4.1LG15g04120.1 Cpe15g00420 481878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00420 163 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
Cpe15g00420 163 CDD CAP_PR-1 29 163 - -
Cpe15g00420 163 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Cpe15g00420 163 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Cpe15g00420 163 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Cpe15g00420 163 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Cpe15g00420 163 SUPERFAMILY PR-1-like 16 163 IPR035940 -
Cpe15g00420 163 PANTHER PATHOGENESIS-RELATED PROTEIN 1 22 163 - -
Cpe15g00420 163 SMART SCP_3 27 159 IPR014044 -
Cpe15g00420 163 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 22 163 IPR001283 -
Cpe15g00420 163 ProSitePatterns CRISP family signature 2. 146 157 IPR018244 GO:0005576
Cpe15g00420 163 Pfam Cysteine-rich secretory protein family 33 151 IPR014044 -
Cpe15g00420 163 Gene3D CAP 27 163 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00420 K13449 PR1; pathogenesis-related protein 1 - csv:101213016 268.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00380 Cpe15g00420 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00336 Cpe-Chr4:4095712 Cpe15g00420 Cpe-Chr15:5346921 6.87E-88 dispersed
Cpe15g00420 Cpe-Chr15:5346921 Cpe15g00422 Cpe-Chr15:5353993 2.24E-91 dispersed
Cpe15g00419 Cpe-Chr15:5341479 Cpe15g00420 Cpe-Chr15:5346921 1.31E-71 tandem
Cpe15g00420 Cpe-Chr15:5346921 Cpe15g00421 Cpe-Chr15:5351516 2.35E-103 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00420 Cpe_Chr15 FPKM 1.626588 1.807279 0.045062 0.255341 0.088699 0.0 0.085296 0.380263 0.207046 0.243867