Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00421 ATGGATCTTTTTAAGCTCTCCCTCTTCCTCTTCTATGTCTCGAGCTTTACGATGCTTCCTTCTTCTCTCGCTCAAGATTCTCTTCAAGATTTCGTAAATGCGCACAATGTAGCTCGTGCCCAAGTTGGCGTTGGGCCGGTCAAGTGGGACGAAAAGGTAGCCAGTTTTGCTAGACAATATGCCAACCAACGAATCAACGACTGTCGATTGATGCACTCAAGCGGACCATATGGAGAGAATCTTGCATGGGGTAGTTCCGACTTATCAGGCATAGCTGCCGTTCGAATGTGGGTTGATGAGAAGCAATTCTACAATCCTCGCACCAATACTTGTGCGACTGGCAAGGTATGTGGCCATTACACTCAAGTGGTGTGGAGAAGCTCGGTGAGAATTGGATGTGCTAAAGTGAAGTGCACAAACAATCGTGGTACATTCATCACTTGCAACTATGATCCACCAGGCAATGTCGTAGGTCAAAGGCCATTTTGA 489 46.83 MDLFKLSLFLFYVSSFTMLPSSLAQDSLQDFVNAHNVARAQVGVGPVKWDEKVASFARQYANQRINDCRLMHSSGPYGENLAWGSSDLSGIAAVRMWVDEKQFYNPRTNTCATGKVCGHYTQVVWRSSVRIGCAKVKCTNNRGTFITCNYDPPGNVVGQRPF 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5351516 5352004 + Cp4.1LG15g04130.1 Cpe15g00421 481879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00421 162 Gene3D CAP 26 162 IPR035940 -
Cpe15g00421 162 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576
Cpe15g00421 162 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 22 162 IPR001283 -
Cpe15g00421 162 SMART SCP_3 26 158 IPR014044 -
Cpe15g00421 162 PANTHER PATHOGENESIS-RELATED PROTEIN 1 22 162 - -
Cpe15g00421 162 SUPERFAMILY PR-1-like 15 162 IPR035940 -
Cpe15g00421 162 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Cpe15g00421 162 PRINTS Allergen V5/Tpx-1 family signature 93 106 IPR001283 -
Cpe15g00421 162 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Cpe15g00421 162 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
Cpe15g00421 162 Pfam Cysteine-rich secretory protein family 32 150 IPR014044 -
Cpe15g00421 162 ProSitePatterns CRISP family signature 1. 118 128 IPR018244 GO:0005576
Cpe15g00421 162 CDD CAP_PR-1 29 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00421 K13449 PR1; pathogenesis-related protein 1 - csv:101213016 263.077
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00337 Cpe15g00421 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00339 Cpe-Chr4:4114922 Cpe15g00421 Cpe-Chr15:5351516 2.74E-61 dispersed
Cpe04g01290 Cpe-Chr4:10644695 Cpe15g00421 Cpe-Chr15:5351516 1.10E-53 dispersed
Cpe15g00330 Cpe-Chr15:4421911 Cpe15g00421 Cpe-Chr15:5351516 8.01E-79 dispersed
Cpe15g00421 Cpe-Chr15:5351516 Cpe15g00425 Cpe-Chr15:5386033 1.04E-102 dispersed
Cpe15g00420 Cpe-Chr15:5346921 Cpe15g00421 Cpe-Chr15:5351516 2.35E-103 tandem
Cpe15g00421 Cpe-Chr15:5351516 Cpe15g00422 Cpe-Chr15:5353993 7.58E-96 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g795 . . Bda06g01147 . Bpe07g00299 . . Bma12g00311 Cmo19g00542 . . . . . . Cpe04g00337 Cpe15g00421 . . . . . . . Cla02g00708 Cam02g0744 Cec02g0756 Cco02g0783 Clacu02g0751 Cmu02g0745 Cre02g1060 Cone12ag1024 Cone8ag1057 . . Lsi03g00624 Csa07g00662 . Cme01g00141 . . . . . . . . . . . . Cma19g00533 . . . . . . . . . . . . . . . . . . . . Chy01g00152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00421 Cpe_Chr15 FPKM 12.925445 14.386957 14.595808 14.421472 11.950018 10.556646 12.071312 19.806261 17.373684 15.469733