Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00430 ATGCTTGTTCAGTGTTGGAAGCTTGAAAGCGTCACACCAGCGGCAATCCTCATGTTCCATAGTTGTTCTTCTTTGCAGATGCGAACTATAGGAGCAATACGACCTCAATTGACGGAGTTATTCAACCGTTCGTGTTTCAGAAGCTTCAGAGTTAGAGCTCTCTCGTCTTCATCTCTGGCTTCCTCGAATCAATCCCGCGGTGGTCTTCCTCGCTTCTTCTCCCAAGTTCTTCCTTCTTATAAGATGGTTCTTTGTGGGGGAGTTGGTATCTATGAACTTATGAGATGGATAATGGCATTTACTAAGATGAAATGGGATAGGATGGATGGTTGTTTCCCTAATGGTATCTCTATTGGTTTCTTCAATGAGATTGTGATGCTTGGTTTGATTCTGGAACTGGAACTGCTGTCTTATCATATGCTTCGTCGTTATCCAGGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACGTTCGTGTCAACGGACTCGACATTCTGGCAATGGAAGATCCAAAATCTGTTCTACCTCAAAGCACACAGTGGCATGTATTTGCAGCTTGTGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAGAAATGTACAGAACTGGGTGCCAGTAGCGTAACTCCACTGCTAACAGAACGTTGCGCTACCATATCTGATAACCGGGTACACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTCAAAGACTGCACCAAATGAGTCTGAATTCTCCATTGAAGATTTATGGTCTTTTGCACATTATTAATGAGTCGAAGCTATCTTTTGTAGCAGTTGCAGAAGCAACCCCGCTTGTAAGTGCATTAGCTTCAATTGAAACCGAGTCTGGTGGGCTTTTGGTCGTCGGACCTGAAGGAGACTTCACCGAAAAAGAGGTCAATATGATGAAAGAAGCTGGTGCAATTCCAGTTGGTCTTGGTCCATATCGACTTCGTGTTGAAACTGCAACAGTTGCAATCTTATCAACCCTGATGTTATGGTCTGACTCGAAAAGTTCTAATCGTTAA 1062 43.69 MLVQCWKLESVTPAAILMFHSCSSLQMRTIGAIRPQLTELFNRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQVLPSYKMVLCGGVGIYELMRWIMAFTKMKWDRMDGCFPNGISIGFFNEIVMLGLILELELLSYHMLRRYPGVELFNGNGGLVEGSIKNVRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIYGLLHIINESKLSFVAVAEATPLVSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLMLWSDSKSSNR 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5444568 5455402 + Cp4.1LG15g04260.1 Cpe15g00430 481888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00430 353 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 185 343 IPR006700 GO:0006364|GO:0008168
Cpe15g00430 353 Gene3D - 138 352 IPR029026 -
Cpe15g00430 353 Pfam RNA methyltransferase domain 187 342 IPR046886 -
Cpe15g00430 353 SUPERFAMILY alpha/beta knot 185 346 IPR029028 -
Cpe15g00430 353 CDD RsmE-like 192 340 IPR046886 -
Cpe15g00430 353 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 146 350 IPR006700 GO:0006364|GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00430 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] - csv:101213733 442.195
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g763 Blo02g00922 Blo03g00061 . . . . . . Cmo19g00555 . . . . . . . Cpe15g00430 . . . . . . . Cla02g00696 Cam02g0729 Cec02g0744 Cco02g0768 Clacu02g0740 Cmu02g0735 Cre02g1048 . . Cone3ag1042 . Lsi03g00598 Csa07g00671 . Cme01g00133 . . . . . . . . Sed07g1141 Cmo04g00467 . . Cma19g00541 . Car19g00398 . . Bhi11g01118 Tan01g0612 Cmetu07g1601 . . Mch10g0413 . . . . . . . . . . Chy01g00144 Cme07g02206
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011527 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 5 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00430 Cpe_Chr15 FPKM 13.309095 13.761449 10.595782 11.129224 11.320757 10.793773 10.935278 17.117727 16.37516 17.608501