Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00437 ATGGGAAAGAAGCAGATTGACGGCGATGGCGATCGTCCGTGGCAGTCTTACAACACTGTCTACACCAATGCAAAAGCCGGTATGGAAGGTGTTGACAAGGAGAAAGTACAAAGAATTGTCTATGAAATGAGTAAAGGGTCGAAATATTTTGAAAATGAGGAGCGGAAAGAGGTCATCATCAGAGAAAAGATTGAGAAGATGCGAGCTAGATGTATGCAGCTTACTGCAACGGATCTTTCTCAGTATCAAAAGGTTGCAGATAAAAGAATTTTGGAGCTGGAAAGTACACGTGACCTGTCAAGGATATGGTTGCATGTAGATATGGATGCTTTCTATGCCGCTGTTGAAACTTTAAGCAATCCTTTATTAGAGGGCAAGCCAATGGCTGTTGGTAGCATGTCGATGATTTCCACTGCTAACTATGAGGCTCGAAAATATGGTGTTCGTGCTGCTATGCCTGGTTTTATTGCACGTAGATTGTGTCCAGAGTTAATTTTTGTTCCCACAGATTTCAAGAAGTATAATTATTACAGTGATTTAGCTAGAAAAGTATTCCGTAGGTATGATCCCAACTTCTTGGCTGCTAGTCTGGATGAAGCATACCTCGATATAACTGAAGTCTGCAAAGATAGAGGCCTTACTAGTGAACAAATTGCTATGGATCTCAGAACCAGTATTTATGAAGAAACTGGTCTTACGTGTAGTGCTGGGGTTGCTGCCAACCGGCTACTTGCCAAGGTCTGCTCTGATATTAACAAACCAAATGGACAGTTCATTTTGCCAAATGACCGAAGAGCTATTGTAACATTCGTATCATCACTACCCATAAGAAAGATTGGTGGCATCGGAAAGGTCACTGAACATATCTTAAAGGACGCTTTGGGGATTAATACATGTGAGGAGATGCTACAGAAGGGTGGTCACCTCTGTGCGTTGTTTTCTATATCCTCAGCAGATTTTTTCTTGTCGGTTGGGCTTGGCCTCGGGAGCACCGATACTCCACAGGTGAGATTGCGTAAGAGCATCAGTAACGAAAGAACTTTTGCAGCCACTGCTGAAGAAAAATTAATTTTCCAGAAACTTGAAGACTGGCTGCGGAGACTAGTATTGCTTGGTGATCAGGAAAATGAATCCGCCATTGTTGAATTCTTTGACCTGATCACTAGAAAGAATCCCATCAGCAGTCCAAAGATAACTTTACTCTCTGACCTTGCAGAGATGCTGTCTATGGACATGGAAAAAGAAGGTCTGAGCGGGCGAACACTGACGCTTAAACTAAAAACTGCATCCTTTGAGGTTAGAACCAGAGCTGTAACTTTGCAACAATACATTTGTTCTAGCAGTGACATCTTGCAACATGCATCAAAGCTGCTAAAGGCTGAACTGCCCATTTCTTTGAGACTAATCGGTTGCAATGACGCTGAGAAGTCGGAGAAATTTAAGAATCTTTCGAGCAACGTCAGTACTGATCAGGTGGACAATGTTAATGGCTTTGTCCCTCGAGCATCGGGCACAGCGTGTGCTTCTTCCCCTAGAAACATCGAAGGCATTCATAATAATAATGTTGAAGCCAGAACTCACGTCGAGGCAAGATCACCAGATAATAATGGACAGAATTTGTGGATCGATGACTACAAATGTGCAATCTGTGGTGCCGAAGTACCAGAGAGTTTCATTGATGAAAGACAAGAGCACATGGATTTTCACATTGCGGAAAAACTCCAGGAAGAGGAATCTGGCATTCGTTCAAGAACCCTTACGCCAATCCGAAGGACTCCTGACAAGAACCAACTGACAAGTCAAAGGAAGCAGAAAAGGCAAAAGTCAACTCCAAAGAAAGAGGTCAAACACATTCCAATTGACTTATTCTTTGTGAAGAATAATCAGAAGTTTTAG 1896 42.46 MGKKQIDGDGDRPWQSYNTVYTNAKAGMEGVDKEKVQRIVYEMSKGSKYFENEERKEVIIREKIEKMRARCMQLTATDLSQYQKVADKRILELESTRDLSRIWLHVDMDAFYAAVETLSNPLLEGKPMAVGSMSMISTANYEARKYGVRAAMPGFIARRLCPELIFVPTDFKKYNYYSDLARKVFRRYDPNFLAASLDEAYLDITEVCKDRGLTSEQIAMDLRTSIYEETGLTCSAGVAANRLLAKVCSDINKPNGQFILPNDRRAIVTFVSSLPIRKIGGIGKVTEHILKDALGINTCEEMLQKGGHLCALFSISSADFFLSVGLGLGSTDTPQVRLRKSISNERTFAATAEEKLIFQKLEDWLRRLVLLGDQENESAIVEFFDLITRKNPISSPKITLLSDLAEMLSMDMEKEGLSGRTLTLKLKTASFEVRTRAVTLQQYICSSSDILQHASKLLKAELPISLRLIGCNDAEKSEKFKNLSSNVSTDQVDNVNGFVPRASGTACASSPRNIEGIHNNNVEARTHVEARSPDNNGQNLWIDDYKCAICGAEVPESFIDERQEHMDFHIAEKLQEEESGIRSRTLTPIRRTPDKNQLTSQRKQKRQKSTPKKEVKHIPIDLFFVKNNQKF 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5504738 5513822 + Cp4.1LG15g04370.1 Cpe15g00437 481895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00437 631 Gene3D - 259 332 - -
Cpe15g00437 631 MobiDBLite consensus disorder prediction 574 614 - -
Cpe15g00437 631 PIRSF DNA_pol_eta 95 217 - -
Cpe15g00437 631 PIRSF DNA_pol_eta 211 348 - -
Cpe15g00437 631 PIRSF DNA_pol_eta 329 628 - -
Cpe15g00437 631 Pfam Ubiquitin-Binding Zinc Finger 543 577 IPR041298 -
Cpe15g00437 631 Gene3D - 120 168 - -
Cpe15g00437 631 Pfam impB/mucB/samB family 106 250 IPR001126 GO:0006281
Cpe15g00437 631 ProSiteProfiles UmuC domain profile. 103 283 IPR001126 GO:0006281
Cpe15g00437 631 Gene3D - 394 479 IPR036775 GO:0003684|GO:0006281
Cpe15g00437 631 Pfam impB/mucB/samB family C-terminal domain 401 470 IPR017961 GO:0003684|GO:0006281
Cpe15g00437 631 PANTHER DNA POLYMERASE KAPPA 9 368 - -
Cpe15g00437 631 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 400 605 - -
Cpe15g00437 631 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 9 368 - -
Cpe15g00437 631 SUPERFAMILY DNA/RNA polymerases 77 331 IPR043502 -
Cpe15g00437 631 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 399 471 IPR036775 GO:0003684|GO:0006281
Cpe15g00437 631 ProSiteProfiles Zinc finger UBZ3-type profile. 540 577 IPR041298 -
Cpe15g00437 631 Gene3D - 21 107 - -
Cpe15g00437 631 PANTHER DNA POLYMERASE KAPPA 400 605 - -
Cpe15g00437 631 Gene3D - 108 258 IPR043128 -
Cpe15g00437 631 CDD PolY_Pol_IV_kappa 104 470 IPR022880 GO:0003887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00437 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7] - csv:101212452 746.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00437 Cpe-Chr15:5504738 Cpe15g00458 Cpe-Chr15:5648880 8.55E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00437 Cpe_Chr15 FPKM 142.740234 157.668671 72.161743 69.72625 83.82238 100.308128 84.037468 119.880966 120.754875 108.809517