Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00438 ATGGCGGCGTTTCGGTCTGCATTCGATGCCGGAGAGATGAGAACCGAGTTCGAGAAGGCCGGCATCAAATCGACCTTCATCCCCTTCATTTGGAAGCAGTTGCTTCATGATTCAAACAACCTATTGAACCAAAATATGGCATCCGAATTCCAATGGGAGAAAGCCGTGCCTTCGCTGCCATCGGCGGCTTACTCCTTGCTCCGGTCAAAGTTTAAGCCTCTTACTTCCACCGTCAATACCGTTGTCGATTCCTCCGATCAGGCCACCACCAAGCTCCTTATCAAGCTTCAGAGTGGGGCTTTTGTGGAGGCTGTCATCATGAGGTATGATTCTCGTCTGGGAAAATATGGCGACAAACCTCGTCCAGGTGGTCTGCGGTCTACTCTCTGTATTTCTTCGCAGGTTGGCTGCAAAATGGGCTGCAGATTCTGTGCAACCGGAACAATGGGATACAAAAGCAATCTGACTTCAGGGGAGATAGTAGAGCAGTTGGTCCATGCCTCCCGTTTGTTCCAAATACGCAATGTTGTTTTCATGGGAATGGGAGAACCATTGAATAACTATTCTGCTTTAGTGGAAGCTGTCCGTGTCATGATAGGCTCCCCATTCTTATTATCACCCAAGAGAATTACGATCTCAACTGTTGGGATTATTCATGCTATAAGCAAACTGCATGGTGATCTACCGGGATTGAACTTGGCCGTTTCCTTGCACGCACCTGCGCAAGATATTCGTTGCCAGATAATGCCTGCAGCTCGGGCTTTTCCTTTACAAAAACTTATGGATGCTCTCCAAGAATATCAACAAAAGAGTCAGCAAAAGATATTCATTGAGTACATAATGCTTGACGGAGTGAATGATGAAGAGCAACATGCCCACCAACTCGGAAAGTTGTTAGAGACATTCCAAGTGGTTGTGAACTTAATACCATTCAATCCTATTGGTAGTTCAAGCCAATTCAAAACCAGTAGTGATGAGAAAGTTTCAGCATTCCAACAAGTTCTTCGGGGTACGTATAATATACGCACAACCATTCGTAAGCAGATGGGTCAAGATATTAGTGGTGCATGTGGTCAACTGGTGGTCAGCCAGACTAATAGAATCTCCGGTAAACAAACAAATGTTCTACCTGACATTGAAGATCTTCACCTCTGA 1155 45.54 MAAFRSAFDAGEMRTEFEKAGIKSTFIPFIWKQLLHDSNNLLNQNMASEFQWEKAVPSLPSAAYSLLRSKFKPLTSTVNTVVDSSDQATTKLLIKLQSGAFVEAVIMRYDSRLGKYGDKPRPGGLRSTLCISSQVGCKMGCRFCATGTMGYKSNLTSGEIVEQLVHASRLFQIRNVVFMGMGEPLNNYSALVEAVRVMIGSPFLLSPKRITISTVGIIHAISKLHGDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLQKLMDALQEYQQKSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSSSQFKTSSDEKVSAFQQVLRGTYNIRTTIRKQMGQDISGACGQLVVSQTNRISGKQTNVLPDIEDLHL 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5514145 5519392 - Cp4.1LG15g04380.1 Cpe15g00438 481896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00438 384 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 67 364 IPR027492 GO:0030488|GO:0070475
Cpe15g00438 384 PIRSF Cfr 13 377 IPR004383 GO:0006364|GO:0008173
Cpe15g00438 384 PANTHER 23S RRNA METHYLTRANSFERASE 3 376 IPR040072 -
Cpe15g00438 384 Pfam Radical SAM superfamily 132 290 IPR007197 GO:0003824|GO:0051536
Cpe15g00438 384 SUPERFAMILY Radical SAM enzymes 127 306 - -
Cpe15g00438 384 ProSiteProfiles Radical SAM core domain profile. 123 352 IPR007197 GO:0003824|GO:0051536
Cpe15g00438 384 Pfam 4Fe-4S single cluster domain 136 221 - -
Cpe15g00438 384 SFLD methyltransferase (Class A) 54 368 - -
Cpe15g00438 384 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 3 376 - -
Cpe15g00438 384 Gene3D Aldolase class I 76 369 IPR013785 -
Cpe15g00438 384 SFLD adenosine C2 methyltransferase (RlmN-like) 54 368 IPR004383 GO:0006364|GO:0008173
Cpe15g00438 384 CDD Radical_SAM 136 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00438 - - - csv:101215180 689.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01100 Cpe-Chr1:6494623 Cpe15g00438 Cpe-Chr15:5514145 3.02E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g704 . . . . . . . . Cmo19g00565 . . . . . . . Cpe15g00438 . . . . . . . Cla02g00682 Cam02g0716 Cec02g0729 Cco02g0751 Clacu02g0725 Cmu02g0723 Cre02g1035 Cone12ag1045 Cone8ag1078 . . Lsi03g00576 Csa07g00683 . Cme01g00121 . . . . . . . . . . . . Cma19g00551 . Car19g00409 . . . . . . . . . . . . . . . . . . Chy01g00131 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011647 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00438 Cpe_Chr15 FPKM 88.504921 91.024506 83.449799 83.634811 73.485039 80.042336 70.224396 108.855392 105.90303 99.878357