Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00442 CCCATTGCAGAGGGAGATGATCAATGGAGCTCTCTCAATGGAGCCTTCACAGCCGATGAAGAAGAAGCGACGTTCGTGGCTCAGCTCTTCGCACCGCCCGACCCTTTCATGGCTAACCTTCATGATCTTCATCAACCTCCTTGTGAACCAGCTTCTTGTTCAAGCTTTTATAGGGTTTCACAAGAGAGTAGTGAGTTCAGTGGTGGAAGTTATTGCAGCCAATTGTTGTTCTCTGGGTCTGAAAGTAATGATCATTATTATTATTGTAATCCAATGGATAATCATGATTTTAGCTTGGGAGAGCTTGGAAGCAATAACAATGGCGGATTCCATCTTGAAGATCATGAGGACTCCATGAATATAGAAGCTGTTGTGGGAGAAGAGGGCGGTAACCCACTTGATATCAATGCCAAGAAAAGATCAAGGGGATTTGGGGATTTACAGAAGAGGAGGAATGAGAAGTCAAAGAAAACTCAAAAGCTTATCACTGAAGAAGATGGTAACAATGCTGCGCATAACAGGCAAAGCACAAGCAGCTATTGCTCCGAAGACGAATCCAACGCCTCTCTCGAGCTAAACGGAGGAGTTAATAACTCGGGACCGAGTCCGAACAGGCCGACCAAATCCCGAGCCAGTAGAGGCTCAGCTACTGATCCGCAAAGCCTCTATGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGCACAATGCTCGAGGAAGCTGTTCAATATGTGAAGTTTCTACAGCTCCAAATCAAGCTATTAAGCTCGGATGATTTATGGATGTATGCTCCGATCGCTTACAACGGAATGGATATCGGGCTTAATCCGACCCCGAACACACCGAAAGTGTTA 852 45.42 PIAEGDDQWSSLNGAFTADEEEATFVAQLFAPPDPFMANLHDLHQPPCEPASCSSFYRVSQESSEFSGGSYCSQLLFSGSESNDHYYYCNPMDNHDFSLGELGSNNNGGFHLEDHEDSMNIEAVVGEEGGNPLDINAKKRSRGFGDLQKRRNEKSKKTQKLITEEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNRPTKSRASRGSATDPQSLYARRRRERINESTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5543153 5546067 - Cp4.1LG15g04420.1 Cpe15g00442 481900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00442 284 MobiDBLite consensus disorder prediction 133 163 - -
Cpe15g00442 284 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 113 233 - -
Cpe15g00442 284 MobiDBLite consensus disorder prediction 128 227 - -
Cpe15g00442 284 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 234 276 - -
Cpe15g00442 284 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 234 276 - -
Cpe15g00442 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 264 IPR036638 GO:0046983
Cpe15g00442 284 MobiDBLite consensus disorder prediction 164 219 - -
Cpe15g00442 284 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 113 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00442 - - - cmax:111471089 465.307
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00404 Cpe15g00442 CCT
Cpe14g00269 Cpe15g00442 CCT
Cpe14g00269 Cpe15g00442 ECH
Cpe01g00404 Cpe15g00442 ECH
Cpe04g00326 Cpe15g00442 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00404 Cpe-Chr1:2341237 Cpe15g00442 Cpe-Chr15:5543153 3.65E-42 dispersed
Cpe04g00326 Cpe-Chr4:4005182 Cpe15g00442 Cpe-Chr15:5543153 1.80E-96 dispersed
Cpe11g00124 Cpe-Chr11:681069 Cpe15g00442 Cpe-Chr15:5543153 1.14E-39 dispersed
Cpe14g00269 Cpe-Chr14:1556221 Cpe15g00442 Cpe-Chr15:5543153 2.33E-42 dispersed
Cpe15g00442 Cpe-Chr15:5543153 Cpe18g00556 Cpe-Chr18:6104913 9.95E-12 dispersed
Cpe15g00441 Cpe-Chr15:5540508 Cpe15g00442 Cpe-Chr15:5543153 9.27E-29 tandem
Cpe15g00442 Cpe-Chr15:5543153 Cpe07g00514 Cpe-Chr7:3391186 2.71E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g698 . . . Bda08g00680 . . Bma05g00650 . . Cmo11g01419 . . . . . Cpe04g00326 Cpe15g00442 . . . . . . . Cla02g00679 Cam02g0712 Cec02g0725 Cco02g0747 Clacu02g0721 Cmu02g0719 Cre02g1031 Cone12ag1048 . . Cone10ag1041 Lsi03g00573 Csa07g00687 . Cme01g00118 . . . . . Bpe05g00472 . . Sed07g1264 . Cmo16g00342 Cma11g01701 Cma19g00554 Car11g01142 Car19g00413 Cpe14g00269 Cpe01g00404 Bhi11g01138 Tan01g0640 Cmetu07g1092 . Hepe07g0418 Mch10g0448 . . . . . . . . Lsi03g01026 . Chy01g00128 Cme07g02178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000893 1 3 0 1 2 3 5 3 3 3 3 3 5 3 3 3 3 2 5 3 3 3 3 3 3 3 3 4 3 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00442 Cpe_Chr15 FPKM 6.096491 10.204783 8.156441 8.453511 16.283207 10.565738 15.516058 8.303282 6.22407 8.044659