Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00455 ATGGACCCGCCGGAGTGCCAGAAGCCTTCCGTCCGAACGTCGAAGAAGCGCAACTCGGAGGAAGACTTGCAACTGGCCACTGCCAACAAGAGAGCCGTGCTTGACGAGATCACCAACTCGTTGATCTTCAGTTCGAATCAGTGCTCTCTTTCTGATCAGGAGATGACGGATAAGCATCTGGACGAAGAGAAACTTCCTGAAGGAAGGTCTGTTGATTGTTCTAAGAAGTCTGGCTCTGCTTCTAGCATTTATAACCAACTTCGATTACTGGAGATGGAATTACACATGAAGGTACTGCCAAACATTGGAAAGGCTCACAACGATCACTCCAGTGTAACGTTCCCTCGTTTCCGAGAAATTCTAGTCGATTGGTTAATAGACGTTGCTGAGGAATACAAGCTTGTATCAGACACCCTATATCTCACTGTATCACACATTGACAGATACTTATCCTGGCATGCTGTTGACAGAAACAAGCTACAACTTCTTGGTGTTTGTTGCATGCTAATTGCATCGAAGTATGAAGAGATCAATCCTCCTCACGTTGAAGACTTCTGCTATATAACTGATAATGCGTATACCATTGAACAGGCTCCAGACTTGGAATTTGAGTTCTTGAGTTGTTATCTTGCGGAGCTAAGTTTGTTAGATCACCGTTTTGTTCAATTCTTACCTTCAAAGATCGCTGCATCAGCCATTTTTCTTTCGAGAATGACAATCAAACCACAGAACCATCCTTGGTGTTTAGCACTACAACATTGCTCCGGTTACAGGCCATCTGAATTGAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAACAGAAAAAAAAGCTCTTTACTAGCTTTAAGAGACAAGTACAAGCAGCATAAGTTCATGTGTGTGGCAGAGCTATCGTCTCCCCCAGAAATTCCTGCACATTATTTCGAGGACATTGATCAGCAATCATCAACAGGTTCTTAA 966 43.17 MDPPECQKPSVRTSKKRNSEEDLQLATANKRAVLDEITNSLIFSSNQCSLSDQEMTDKHLDEEKLPEGRSVDCSKKSGSASSIYNQLRLLEMELHMKVLPNIGKAHNDHSSVTFPRFREILVDWLIDVAEEYKLVSDTLYLTVSHIDRYLSWHAVDRNKLQLLGVCCMLIASKYEEINPPHVEDFCYITDNAYTIEQAPDLEFEFLSCYLAELSLLDHRFVQFLPSKIAASAIFLSRMTIKPQNHPWCLALQHCSGYRPSELKECILAIHDLQLNRKKSSLLALRDKYKQHKFMCVAELSSPPEIPAHYFEDIDQQSSTGS 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5624271 5628547 + Cp4.1LG15g04470.1 Cpe15g00455 481913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00455 321 SUPERFAMILY Cyclin-like 89 207 IPR036915 -
Cpe15g00455 321 Gene3D - 209 266 - -
Cpe15g00455 321 CDD CYCLIN 200 270 IPR013763 -
Cpe15g00455 321 SMART Cyclin_C_2 180 302 IPR004367 -
Cpe15g00455 321 SUPERFAMILY Cyclin-like 197 303 IPR036915 -
Cpe15g00455 321 PIRSF Cyclin_A_B_D_E 2 206 IPR039361 -
Cpe15g00455 321 PIRSF Cyclin_A_B_D_E 195 310 IPR039361 -
Cpe15g00455 321 Pfam Cyclin, N-terminal domain 107 207 IPR006671 -
Cpe15g00455 321 PANTHER CYCLIN-A3-1-LIKE 200 312 - -
Cpe15g00455 321 PANTHER CYCLIN-A3-1-LIKE 29 202 - -
Cpe15g00455 321 Gene3D - 98 201 - -
Cpe15g00455 321 SMART cyclin_7 123 207 IPR013763 -
Cpe15g00455 321 SMART cyclin_7 208 271 IPR013763 -
Cpe15g00455 321 MobiDBLite consensus disorder prediction 1 22 - -
Cpe15g00455 321 CDD CYCLIN 118 192 IPR013763 -
Cpe15g00455 321 PANTHER CYCLINS 200 312 IPR039361 -
Cpe15g00455 321 PANTHER CYCLINS 29 202 IPR039361 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00455 K06627 CCNA; cyclin-A - csv:101213896 471.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00309 Cpe15g00455 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00455 Cpe-Chr15:5624271 Cpe12g00714 Cpe-Chr12:6723254 5.94E-65 dispersed
Cpe11g00133 Cpe-Chr11:725289 Cpe15g00455 Cpe-Chr15:5624271 8.72E-89 wgd
Cpe15g00455 Cpe-Chr15:5624271 Cpe02g00206 Cpe-Chr2:1058884 1.26E-86 wgd
Cpe15g00455 Cpe-Chr15:5624271 Cpe04g00309 Cpe-Chr4:3874502 2.52E-68 wgd
Cpe15g00455 Cpe-Chr15:5624271 Cpe06g00185 Cpe-Chr6:995417 9.54E-91 wgd
Cpe15g00455 Cpe-Chr15:5624271 Cpe07g00503 Cpe-Chr7:3300135 2.87E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g655 . . . . . . . . Cmo19g00580 Cmo11g01399 . . . . . Cpe04g00309 Cpe15g00455 Bhi05g01057 Tan02g1772 . Lac12g0195 . . . Cla02g00659 Cam02g0694 Cec02g0707 Cco02g0726 Clacu02g0700 Cmu02g0698 Cre02g1013 . . . . Lsi03g00554 Csa07g00705 . Cme01g00101 . . . . . . . . . . . Cma11g01716 Cma19g00567 Car11g01125 Car19g00427 . . . . . . . . . . . . . . . . . . Chy01g00109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012970 0 2 0 0 0 1 2 1 1 0 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00455 Cpe_Chr15 FPKM 0.0 0.0 0.0 0.0 1.720952 2.263687 0.817611 0.0 0.0 0.0