Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00458 ATGAATTCTGGTTCGTCTCGCTCGGCTAATTCCTCCGCCCAGAGATCCAAGCGAATTCTCGACAATTCTTCTCCGTCGAGCCCTTCCAGTAGCGGTGCCAACAAGAAGAAACGGATCGACCAGAAAACCCTAGGCGTCGCATGGGGAGCCAATTCCAGTTCATCCTCTCGCTCCTCTCGCAAATCGCCCTTTCCAGATTTCGGAAGCTATATGGTAGAAAAGAACAGAAAACTGCACAATCAGTTTAACGTTGACGCTTCAAGTGCTTCACATAGTGGTACGAACTCCGGAAATCAAATATTTCAGGGCGTTTCTATATTTGTTGACGGTTTCACGATTCCTTCAAGTCAGGAATTGCGGGGTTATATGTTGAAGTATGGTGGCAGATTTGAGAATTATTTTTCAAGACGTAGTGTTTCTCATATAATTTGCAGCAATTTACCGGACAGTAAAGTAAAGAATCTCAGGTCCTTCAGCCGTGGACTTCCAGTTGTAAAACCCACATGGATCTTGGATTCTGTTGCTTCTAATGAGCTATTAAGTTGGGTTCCTTACCAACTTGATCAGCTTGTAAGTAATCAACCAAGATTATCAGCATTCTTTTCTATGAAAAAAGGTCCGATGTTGGAGAAACGCAAAATGTGCATGACTACTGAAAAGAACTATGGAACAGAGGATTCAATGTCCCTGGTGGCTGTGAATTTAAAGGATTCACGGTCTGAAGTGAATGAATTGATTGAATCTAGAGCAGAGATGCATTCCGACTCTGAAATGAATCTTCAAGATAATGCAGATACTGAACTGAATGAGAAGCCAAGTGATGATTTAGAGGCTGGCGAATTAAAGGATACAAGTATATCTGATGTAGATGAATCTGTTGAATATGTACCACAAACCTGTGAAAGTTTTGAGATGCTTCCTCGAAATAATGCTGATGTAGAAGTAAAGAAAGAGCCAAGCAACGAAAAATGTGATCATGCAGATGAAGAACCAGGAATTGTTGATGTGGGTCAGAGCAGTGAAGAAAATATATCTAGTTTGCATGGTTTGTCTAAGTCAACTCACAATGATAGCACCAATAATTATTATAGCGATGGATCGTCAAGTTCTTTGGTGGCCGGGTCTTCTAAGCTGCGGCATTCAAATTTTTGGAAGGCAGATTTTGTGGAAAGTTATTTCAAGAAGTCTAGGCTGCATTTCATTGGAACTTGGAGAAATCGTTACTATAAGCGTTTTCCACGTTCAGCTAGTGGGTCCAATTCTGTAACTTCTCATATCAGTGGTTCTTCCCATTATCAGTCTACCACTATTATCCACGTTGACATGGACTGCTTTTTTGTCTCAGTGGTTATTCGAAACAGTCCACAATTTAAGGATAAACCTGTAGCTGTGTGCCACTCGGATAATCCTAAAGGAACTGCAGAAATATCATCTGCAAACTACCCAGCTCGAGGTTATGGAGTCAGAGCGGGAATGTTTGTTAGAGATGCGAAAGCTCTTTGTCCCCAACTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGGTAGCCGATCAGTTCTATGACATATTGCATAAGCACTGTGAGAAAGTGCAGGCCTTAAGTTGTGATGAAGCATTTTTGGATATCTCAGGCACAGACAAGGTAGATCCTGAGGTTTTGGCTTCAAAAATTAGAAAAGAAATTTTTGATACAACTGGATGTACTGCAAGTGCTGGAATATCTACAAATATGCTAATGGCTCGCCTTGCTACCAGAACTGCAAAACCTGATGGCCAGTGTTACATTCCTTCGGAGAAGGTTGATGATTATTTAGATCCGCTTCCCATTAAGGATCTTCCCGGGATAGGGTGTGCCTTGGAGGAGAAGTTGAAGAAAAGAAGTGTATTTACTTGTGGTCAGCTGCGTATGATATCCAAGTTACTCCTCAGTAGTGTCTCCGTAATGGATTTGCTGGATTCTCTTCAGAAAGACTTTGGATTGAAAACAGGGGAGATGCTATGGAATTATAGTCGGGGGGTGGACAATCGTGCAGTTGGGTTGATCCAGGAAAGCAAATCCATAGGAGCTGAAGTGAATTGGGGTGTTAGGTTCAAGGACTTCAAAGATTGTCAATGCTTTCTCTCGAACCTTTGTAAGGAGGTTTCATTACGATTGCATGGATGTGGAGTGCAGGGACGCACCTTTACCCTCAAGATAAAAAAACGAAGGAAAGATGCCGATGAACCGACAAAGTATATGGGCTGTGGAGATTGTGAAAACCTGAGCCACTCGTTGACGGTTCCTGATGCCACTGATGACCTGGAAATTCTTCAGAGGATTGCAAAGCAGCTTTTTGGGTTTTTTGTCATAGATGTCAAAGAAATTCGTGGTATTGGTTTACAAGTTTCGAAGCTTCAAAATGTGGATATCTCTAAGCAAGGGATGAAAAGAAACTCTTTGGACGCATGGCTTCATTCGTCTGGAACGACAAATGTGGAAAATAGTACTGGTCCTTTGGTAAAGGAAAGGGCTAATATAGATAGTGAGAAACAGTGTGACTCTGGAGCTTTAGATCAGTTATCTGCTGATCCTACAAGCCACCTAATTCAATTGGAGAATAATCAGCTCCACTGCGAATCTTTGAACCCGGTTTCAGCTCCACCTCTGTGCAATCTGGATATTGGAGTTATAGGGAGCCTACCTCCTGAGCTCTTTTCAGAGTTAAATGAAATCTATGGTGGAAAACTAGATGATCTCCTAGCTAAAAGCAGATACAAAAGTGAAGCTTTCTCGTCTTCTTTAAGGGTTTCGTCTCAAGGACCAGGAGAAGGTGAAATTTATCTATGGAATAGCTTATTGTCCGGTGATAGACTTACTTCATCAGATGCCCAAGAAAACAAAACACAGTTGGAAAATAAGCACATTGTTGAACGTTCCCCACCTGCACAGATTTCTGGGGAAGGATTGTGCAATGTGGTGACTCCTATACCCACCTCTGGATCTCATAGAATTGATTTACTACCTTCATCTCTAAGTCAAGTAGATCCGTCAGTATTACAAGAGCTACCTGAACCTCTGAGGGATGACATACTTAAGCAACTCCCAGCACACAGGGGAAAAGAGCTTTCTTTAGAACATTCAGTAAAAATTCATCACGAATCTTGTGATGCCACTGCCAGTACGTCTGGCTCAATAGACTCTTTCACGGAGAATGGTCTTTGGTCTGGGAACCCTCCTCTATGGGTTGATAAGTTTAAAGCCAGTAATTGCTTGATATTACAATTTCTTGCAGAGACGTATACAGAGTCGGGGTCACCCGAAAATCTTTATGGGATTTTGCTAAGGACTTTATCTAAATTTTGGCATCCTCCAGTTCCGGAATCTGATGGTTGGGATGGTGCTATTTATGGTTTATGTGAACTTCTTAAGCAGTACTTTAAGTTAAAGATAGAGCTGGACATCGAGGAGACCTATGCTTGTTTTCGTCTTCTTAAGAGGTTAGCGATGAAATCCCAGGGAGCAGTCAATGAATTCTACGGCGGAAGTTTGAAGGTGTAG 3543 41.83 MNSGSSRSANSSAQRSKRILDNSSPSSPSSSGANKKKRIDQKTLGVAWGANSSSSSRSSRKSPFPDFGSYMVEKNRKLHNQFNVDASSASHSGTNSGNQIFQGVSIFVDGFTIPSSQELRGYMLKYGGRFENYFSRRSVSHIICSNLPDSKVKNLRSFSRGLPVVKPTWILDSVASNELLSWVPYQLDQLVSNQPRLSAFFSMKKGPMLEKRKMCMTTEKNYGTEDSMSLVAVNLKDSRSEVNELIESRAEMHSDSEMNLQDNADTELNEKPSDDLEAGELKDTSISDVDESVEYVPQTCESFEMLPRNNADVEVKKEPSNEKCDHADEEPGIVDVGQSSEENISSLHGLSKSTHNDSTNNYYSDGSSSSLVAGSSKLRHSNFWKADFVESYFKKSRLHFIGTWRNRYYKRFPRSASGSNSVTSHISGSSHYQSTTIIHVDMDCFFVSVVIRNSPQFKDKPVAVCHSDNPKGTAEISSANYPARGYGVRAGMFVRDAKALCPQLVIFPYDFKSYEEVADQFYDILHKHCEKVQALSCDEAFLDISGTDKVDPEVLASKIRKEIFDTTGCTASAGISTNMLMARLATRTAKPDGQCYIPSEKVDDYLDPLPIKDLPGIGCALEEKLKKRSVFTCGQLRMISKLLLSSVSVMDLLDSLQKDFGLKTGEMLWNYSRGVDNRAVGLIQESKSIGAEVNWGVRFKDFKDCQCFLSNLCKEVSLRLHGCGVQGRTFTLKIKKRRKDADEPTKYMGCGDCENLSHSLTVPDATDDLEILQRIAKQLFGFFVIDVKEIRGIGLQVSKLQNVDISKQGMKRNSLDAWLHSSGTTNVENSTGPLVKERANIDSEKQCDSGALDQLSADPTSHLIQLENNQLHCESLNPVSAPPLCNLDIGVIGSLPPELFSELNEIYGGKLDDLLAKSRYKSEAFSSSLRVSSQGPGEGEIYLWNSLLSGDRLTSSDAQENKTQLENKHIVERSPPAQISGEGLCNVVTPIPTSGSHRIDLLPSSLSQVDPSVLQELPEPLRDDILKQLPAHRGKELSLEHSVKIHHESCDATASTSGSIDSFTENGLWSGNPPLWVDKFKASNCLILQFLAETYTESGSPENLYGILLRTLSKFWHPPVPESDGWDGAIYGLCELLKQYFKLKIELDIEETYACFRLLKRLAMKSQGAVNEFYGGSLKV 1180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5648880 5661200 - Cp4.1LG15g04560.1 Cpe15g00458 481916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00458 1180 Pfam impB/mucB/samB family C-terminal domain 686 807 IPR017961 GO:0003684|GO:0006281
Cpe15g00458 1180 MobiDBLite consensus disorder prediction 46 63 - -
Cpe15g00458 1180 SUPERFAMILY DNA/RNA polymerases 433 680 IPR043502 -
Cpe15g00458 1180 CDD PolY_Rev1 388 800 - -
Cpe15g00458 1180 PIRSF REV1 50 1093 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Cpe15g00458 1180 Gene3D - 387 421 - -
Cpe15g00458 1180 Gene3D - 685 808 IPR036775 GO:0003684|GO:0006281
Cpe15g00458 1180 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 685 798 IPR036775 GO:0003684|GO:0006281
Cpe15g00458 1180 MobiDBLite consensus disorder prediction 311 332 - -
Cpe15g00458 1180 Pfam BRCT domain, a BRCA1 C-terminus domain 98 185 IPR001357 -
Cpe15g00458 1180 Gene3D - 454 508 - -
Cpe15g00458 1180 MobiDBLite consensus disorder prediction 311 336 - -
Cpe15g00458 1180 MobiDBLite consensus disorder prediction 1 66 - -
Cpe15g00458 1180 Gene3D BRCT domain 90 187 IPR036420 -
Cpe15g00458 1180 ProSiteProfiles BRCT domain profile. 96 187 IPR001357 -
Cpe15g00458 1180 SMART BRCT_7 98 177 IPR001357 -
Cpe15g00458 1180 Pfam impB/mucB/samB family 440 586 IPR001126 GO:0006281
Cpe15g00458 1180 CDD BRCT_Rev1 100 187 - -
Cpe15g00458 1180 PANTHER DNA REPAIR PROTEIN REV1 35 1174 - -
Cpe15g00458 1180 SUPERFAMILY BRCT domain 64 189 IPR036420 -
Cpe15g00458 1180 Gene3D - 609 675 - -
Cpe15g00458 1180 MobiDBLite consensus disorder prediction 267 288 - -
Cpe15g00458 1180 Gene3D - 437 597 IPR043128 -
Cpe15g00458 1180 ProSiteProfiles UmuC domain profile. 437 618 IPR001126 GO:0006281
Cpe15g00458 1180 MobiDBLite consensus disorder prediction 1 34 - -
Cpe15g00458 1180 MobiDBLite consensus disorder prediction 266 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00458 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] - csv:101214381 1863.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00437 Cpe-Chr15:5504738 Cpe15g00458 Cpe-Chr15:5648880 8.55E-33 dispersed
Cpe15g00458 Cpe-Chr15:5648880 Cpe19g01207 Cpe-Chr19:8129821 8.86E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00458 Cpe_Chr15 FPKM 0.0 0.496601 0.732529 1.314587 2.270357 1.368281 2.545187 2.476741 1.973019 1.157749