Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00460 ATGGACCATTTGTCCAATGACCAATTTGCCCGTCGCAGGTTTCCCCATATAAACAACATCGTCTTCTCCGAAGAGAAAATCATTCACAAACCAAATTCCATGGCTTGCCCCAATCTAATCTTCCTAGCTTTCCTTATAACTCTATCCTCCATAAAACCCACAAACTCCGTCGACTTCTCCGTCACCAACGCCGCCGGAAACACCGCCGGCGGCACTCGTTTCGACCAGGAAATCGGAATTTCCAAAGCAGAGAACACTCTAAAAATTGCCACCGATTTCATATTGAAAACATTCCAACAGCAAGACGCCGACGCCGACGCCGACATAAAGACCGTCCACAAAATCCGCCTCGTCATCGACGCCGAATACGACATCGTTTCCTACACTTCCGGCACCGACATATTCATCGCCGCAAACTACATCGCTGAATATCCCGGCGACCTGAGGAACGAATTCGCCGGAATTTTATACCAGGAGCTGACTAAAGTGTGGCAGTGGACTGGAAACGGTGAGGCGCCGGCCGGGCTCATCGAAGGGGTGGCGGAATTCGTGAGGCTGAAATCCGGGTTTGTCCCAGGAGAGTGGGCGGCGGCCGGAGATGGTGAGAGGTGGGATGAGGGCGGCGGAGGGGTGACGGCGAGGTTTCTGGAGTATTTGGAGGGGTTGGGAAGTGGGTTCGTGGCGGAGCTTAACCGGAAAATGAGAAATGGTTACAGCGAAGATTACTTTGTGGAGCTGATGGCCGCGACGGCCGACGAGCTTTGGGCGGAGTACAAGGCGGAGTACGGCAAAATAATTAAATATTAA 807 52.42 MDHLSNDQFARRRFPHINNIVFSEEKIIHKPNSMACPNLIFLAFLITLSSIKPTNSVDFSVTNAAGNTAGGTRFDQEIGISKAENTLKIATDFILKTFQQQDADADADIKTVHKIRLVIDAEYDIVSYTSGTDIFIAANYIAEYPGDLRNEFAGILYQELTKVWQWTGNGEAPAGLIEGVAEFVRLKSGFVPGEWAAAGDGERWDEGGGGVTARFLEYLEGLGSGFVAELNRKMRNGYSEDYFVELMAATADELWAEYKAEYGKIIKY 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5665779 5666585 + Cp4.1LG15g04480.1 Cpe15g00460 481918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00460 268 PANTHER - 39 263 - -
Cpe15g00460 268 Pfam Peptidase of plants and bacteria 56 258 IPR007541 -
Cpe15g00460 268 PANTHER - 39 263 IPR007541 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00460 - - - cpep:111776403 525.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00460 Cpe-Chr15:5665779 Cpe15g00877 Cpe-Chr15:8494145 4.65E-11 dispersed
Cpe15g00459 Cpe-Chr15:5662053 Cpe15g00460 Cpe-Chr15:5665779 4.16E-75 tandem
Cpe15g00460 Cpe-Chr15:5665779 Cpe15g00461 Cpe-Chr15:5668030 9.65E-19 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g643 . . . . . . . . Cmo19g00589 . . . . . . . Cpe15g00460 . . . . . . . Cla02g00647 Cam02g0680 Cec02g0693 Cco02g0713 Clacu02g0688 Cmu02g0683 Cre02g1002 . . . . Lsi03g00543 . . . . . . . . . . . . . . . Cma19g00575 . Car19g00434 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015064 0 1 0 0 0 1 1 1 1 0 1 1 0 0 0 1 1 0 1 1 0 0 0 1 1 1 1 0 0 0 15