Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00464 ATGACTTCCATGGATTCCCTCCCTCATGTCTTTCTCGTCAGCTTCCCCGGCCAAGGCCACATCAACCCCATGCTCCGCCTCGGCAAAAAACTAGCCGCCACCGGCCTTCTCGTCACGTTCTCCACCACCGCCAACGCCGGTCGCAGAATGAAAAACGCCGGCAGCATCTCCGACGACCCAACGCCTCTTGGCAATGGCTTCCTCCGCTTTGAATTCTTCGACGACGGCCTCACCGACACCAGCCCCGCCATCCCCTTCGACCAATACATGCCGCAGCTCCGGCGACTAGGCGAAATTTCACTTCTCCAAATCTTGAAAAACCAAACCAAAGAAAACCGACCGGTCGCCTGCGTTATTGGCAACCCTTTTGTGCCTTGGGTGTGTGACGTGGCCGACCACCTCGGAATCTCCTCCGCCGTCTTATGGGTCCAATCATTGGCTGTCTTATCCATTTATTATCACCATTTTCATGGCTCTGTCCCCTTCCCATCTGAAACCCAACCAAATCTCGACGTTCAGCTGCCTTGTTTGCCACTTTTGAAGTACGATGAAATCCCGAGCTTCTTGCTTCCAAACGACATTTATCATACAATTGGGAAGACTATCTTGGATCAATTTTCGAACCTCTCGAACCCCTTTTGTATATTGATCGACACTTTTGAAGAGCTCGAGGCTGAGATCGTTGAATACATGTCGAAAATTTTTCCCATTAAGACGGTGGGGCCGTTGTTCAAGAATTGTAATGAAATCAAAACTAGTATTTCTGGTGATTGCTTGAGAATTGATGAATGTATGGAGTGGGTCGACTCGAAGCCAAAAGGGTCGGTGGTTTACGTGTCGTTTGGAAGCGTGGTGTATTTGAAACAAGAACAGTTCATGGAAGAGGCCGGCGAGAGAGGGAAGGTGGTTCAATGGAGTCCACAAGAACGAGTACTATCACACCCATCGGTGGCATGTTTCATGACGCATTGCGGATGGAACTCGTCCGTGGAGGCGATAAGCTCCGGCGTGCCGGTGTTGGCATTTCCGCAATGGGGGGATCAGCTCACCAACGCCAAGTTTCTCGTCGATGTGTTCGGCGTCGGTCTCCGCCTGTCTCGTGGAGTCGGAGAAGACAGAGTAATCAAAAGAGATGAGATTGAGAAGTGCCTGAGAGAAGCCATGGTAGGACCCAAGGCGGTGGAGATAAAACAGAAGGCTGTGGAGCGGCAAATGGCGGCGGAGAAGGCGGTGGCTGAAGGTGGGTCCTCCGACAGAAATTTCAAACACTTCATTGATGAGATTAGGAAACGGTCGATTGGTTGTGGTGAGAGATTCCATGTCACTTGTCCCTCTACTACCTAG 1344 51.12 MTSMDSLPHVFLVSFPGQGHINPMLRLGKKLAATGLLVTFSTTANAGRRMKNAGSISDDPTPLGNGFLRFEFFDDGLTDTSPAIPFDQYMPQLRRLGEISLLQILKNQTKENRPVACVIGNPFVPWVCDVADHLGISSAVLWVQSLAVLSIYYHHFHGSVPFPSETQPNLDVQLPCLPLLKYDEIPSFLLPNDIYHTIGKTILDQFSNLSNPFCILIDTFEELEAEIVEYMSKIFPIKTVGPLFKNCNEIKTSISGDCLRIDECMEWVDSKPKGSVVYVSFGSVVYLKQEQFMEEAGERGKVVQWSPQERVLSHPSVACFMTHCGWNSSVEAISSGVPVLAFPQWGDQLTNAKFLVDVFGVGLRLSRGVGEDRVIKRDEIEKCLREAMVGPKAVEIKQKAVERQMAAEKAVAEGGSSDRNFKHFIDEIRKRSIGCGERFHVTCPSTT 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5680575 5682854 - Cp4.1LG15g04740.1 Cpe15g00464 481922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00464 447 Gene3D Glycogen Phosphorylase B; 1 255 - -
Cpe15g00464 447 Gene3D Glycogen Phosphorylase B; 410 421 - -
Cpe15g00464 447 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 291 434 - -
Cpe15g00464 447 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 8 294 - -
Cpe15g00464 447 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 291 434 - -
Cpe15g00464 447 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 8 294 - -
Cpe15g00464 447 CDD GT1_Gtf-like 8 413 IPR002213 GO:0008194
Cpe15g00464 447 ProSitePatterns UDP-glycosyltransferases signature. 305 348 IPR035595 -
Cpe15g00464 447 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 429 - -
Cpe15g00464 447 Gene3D Glycogen Phosphorylase B; 257 293 - -
Cpe15g00464 447 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 299 358 IPR002213 GO:0008194
Cpe15g00464 447 Gene3D Glycogen Phosphorylase B; 294 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00464 K23279 UGT84A13; gallate 1-beta-glucosyltransferase [EC:2.4.1.136] - cmos:111455372 868.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00306 Cpe-Chr4:3846579 Cpe15g00464 Cpe-Chr15:5680575 0 dispersed
Cpe15g00464 Cpe-Chr15:5680575 Cpe17g00384 Cpe-Chr17:2796726 5.43E-73 dispersed
Cpe17g00389 Cpe-Chr17:2839170 Cpe15g00464 Cpe-Chr15:5680575 7.86E-35 dispersed
Cpe15g00464 Cpe-Chr15:5680575 Cpe15g00465 Cpe-Chr15:5687074 2.22E-08 tandem
Cpe12g00407 Cpe-Chr12:2953381 Cpe15g00464 Cpe-Chr15:5680575 5.55E-40 transposed
Cpe15g00464 Cpe-Chr15:5680575 Cpe04g00305 Cpe-Chr4:3830763 4.37E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g636 . . . . . . . . Cmo19g00592 Cmo11g01395 . . . . . . Cpe15g00464 Bhi05g01104 . . . . . . Cla02g00642 . . . . . . . . . . Lsi03g00537 Csa07g00717 . Cme01g00090 . . . . . . . . . . . Cma11g01720 . Car11g01121 . . . . . . . . . . . . . . . . . . . Chy01g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000463 3 5 1 1 1 4 5 5 5 4 5 5 4 3 3 5 5 4 4 5 4 3 4 5 5 5 3 5 4 3 118
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00464 Cpe_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0