Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00465 ATGCCCGCCGAGACCCAACCCCCTTGCAATGTCCTCATGGTCACCTTCCCCGGCCAAGGCCACATGAACCCCACGCTCCGCCTCGGCAAGAAACTCGCTTCCAAAGGCCTTCACATCACAATCTCCACCACCCTCGACTTCGGCGACAGCCTCAGAAACGCCGGAAGTATCGCCGACCACCGTTACCCCTTTGGCGCCGGTTTCATCGACTTCCATTTTTGGAACGACGGCTGGGAGAACGATGACCTCCGACGCAGAGACTTGGACCTTTATCTGCCGCAGCTCGAGCTCACCGGCAAGGCGGCGCTGTCGCGAACGCTCAATGACCGTGCCGCTGAGAATCGGCCGGTTTCTTGTCTCATCGGAAACCCATTTGTTCCGTGGGTTTGCGATGTGGCTAATGAGTTTGGAATCCCCTGTTCTGTTCTCTGGGTTCAATCTTGCTCTGTTTTCTCCATTTATTATCATTTTTCTCGTAAAACCCTGAATTTCCCTTCTGAATCTCATCCATTCTGTGATGTTGAAATACCCTCTCTGCCTCTGCTGAAACACGATGAAATCCCGAGCTTTTTGCACCCATATGGCGAGTATAAGGCCATTGGTCGGTCCATTTTGCAGCAATTTCGAAACGTCTCTGTCCCATTCTGTATTTTGATGGATACTTTCGAGGAACTTGAAAAGGACGTCATCGATCATATCTCGACGATATGCTCTGTTATTCCGATTGATGAGTTTGAGAAGTGTTTAAGGGACGCCATTGTTGGGCCTAAGGCGGAGGAGCTTCGGGAAAACGCCTTAAAGTGGAAGAAGGCGGCGGAGAAGGCGGCGGCGGAGGGCGGCTCCTCTGAGACTCGTATCGATGAGCTCGTCGGCGAGATCAGGAAGCGATCTGGTAACGTTATCAAGTCACAGGCAAGTCGTTGCGTTCGTACTCACTTTTGA 942 52.23 MPAETQPPCNVLMVTFPGQGHMNPTLRLGKKLASKGLHITISTTLDFGDSLRNAGSIADHRYPFGAGFIDFHFWNDGWENDDLRRRDLDLYLPQLELTGKAALSRTLNDRAAENRPVSCLIGNPFVPWVCDVANEFGIPCSVLWVQSCSVFSIYYHFSRKTLNFPSESHPFCDVEIPSLPLLKHDEIPSFLHPYGEYKAIGRSILQQFRNVSVPFCILMDTFEELEKDVIDHISTICSVIPIDEFEKCLRDAIVGPKAEELRENALKWKKAAEKAAAEGGSSETRIDELVGEIRKRSGNVIKSQASRCVRTHF 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5687074 5688552 + Cp4.1LG15g04670.1 Cpe15g00465 481923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00465 313 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 11 295 - -
Cpe15g00465 313 Coils Coil 258 278 - -
Cpe15g00465 313 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 239 299 - -
Cpe15g00465 313 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 8 241 - -
Cpe15g00465 313 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 239 299 - -
Cpe15g00465 313 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 8 241 - -
Cpe15g00465 313 Gene3D Glycogen Phosphorylase B; 276 290 - -
Cpe15g00465 313 Gene3D Glycogen Phosphorylase B; 243 275 - -
Cpe15g00465 313 Gene3D Glycogen Phosphorylase B; 1 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00465 - - K23279 bhj:120078499 416.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00465 Cpe-Chr15:5687074 Cpe17g00384 Cpe-Chr17:2796726 1.13E-27 dispersed
Cpe15g00464 Cpe-Chr15:5680575 Cpe15g00465 Cpe-Chr15:5687074 2.22E-08 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g633 . . . . . . Bma05g00532 . Cmo19g00593 Cmo11g01394 . . . . . . Cpe15g00465 Bhi05g01106 . . . . . . Cla02g00640 . . . . . . . . . . Lsi03g00535 Csa07g00718 . Cme01g00089 . . . . . . . . . . . Cma11g01721 Cma19g00578 Car11g01120 Car19g00438 . . . . . . . . . . . . . . . . . . Chy01g00097 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000463 3 5 1 1 1 4 5 5 5 4 5 5 4 3 3 5 5 4 4 5 4 3 4 5 5 5 3 5 4 3 118
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00465 Cpe_Chr15 FPKM 0.627214 1.010903 0.770382 0.541923 1.666126 1.885235 1.829103 1.166939 1.18923 1.246981