Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00476 AACGCAAAGCACCACATGGGTAACCCTTACCGGACCCACGACGAGGTCGCGGCTCTGTACGAGTCGTGGTTGGTCCATCATGGAAAAGCGTACAACGCTATCGGCGAGAAAGAGCGGCGGTTTGAGATTTTCAAGGATAATCTCAGGTTCATCGATGAACATAACCGGGAATCGCGGAGTTATAAGGTTGGATTGACTCGTTTCGCTGATCTCACCAATGATGAGTATCGGGCCATGTTTTTGGGCGGCCGATTCTCCCCAATGCCTCGCCTATCCGCCGCTAAGAGCAGTAGGTACGCGACGGCTGTCGGCGATGATCTTCCGGATGATGTCGATTGGAGAAAGAAGGGCGCTGTTACGGCTGTTAAAGATCAAGGACAGTGTGATTACCCTTACAAGGCCCGTGATGACACTTGTGATCCCGACCGCAAACATATTAAGGTTGTTGAAATAGATGGGCATGAAGATGTTCCTGAGATTAATGAGAGGTTGTTGAAGACGGCTATGGCAGGTCAACCAGTTAGTGTTGCCATTGAAGCTGCCATTTTCCTCTGTTTTCCCTCATTTTCTTCCGCTTCCGATTCCGATTCACCCACCTTCTCCATCATCGACGAGAATGCAAAACACCACATGGGTATCCCTCATACTCTCGATTCTGATTCCGGCGGCTTCCCTCACCGGACCCACGACGAAATTGCGGCTCTGTTCGAGTCGTGGTTGGTCCATCATGGTAAAGCTTACAATTCTCTCGGCGAGAAGGAGCGGCGGTTGGAGATTTTCAAGGATAATCTCAATTTCATCGATGAACATAACCGGGTGCCAAGGAGTTATAAGGTTGGATTGACCTGTTTCGCTGATCTCACCAATGATGAGTACAGGGCTCTGTTTTTGGGTGCCCGATTCTCCCCATTGCCTCACCTATCCGCCGCGGATAGTGGGAGCTGCTGGGCTTTCTCAGCGGTGGCTGCAGTGGAAGGAATAAACCAAATCGTCACCGGTGAATTAATCTCTCTGTCGGAGCAGGAACTTGTGGACTGCGGTCGATCTAAGTTTCTCAGCGGTTGCAACGGTGGTTATATGGACAAAGCTTTCCGATTCATCATTGACAATGGTGGCATTGACACCGAGGAAGATTACCCTTACAAGGCCCTTGATAATTACACTTGCGATCCCGACCGGATAAATATAAATGTTGTCTCCATAAATGGGTATGTAAATGTTCCTCCGGGGAATGAGAGGTTGTTGAAAATGGCTGTGGCTGGTCAACCAGTTAGTGTTGCCATTGACGCTCATTCCGAAGCCTTACAACTTTACAAATCGGGTGTCTTCACCGGAGACTGCGGAACCGAGCTGGACCACGGTGTTGTTGCTGTTGGGTATGGCACAGAAGATGGTTTAGACTACTGGATCATTAAGAATTCGTGGAGTGAAAATTGGGGAGAGAAGGGTTATATGAAGTTGGAGAGAAATGTGGCAAGCACTACCTTAGGCAAGTGTGGTATAACCCTAATGGCTTCATACCCCATCAAGCTTTGA 1536 49.02 NAKHHMGNPYRTHDEVAALYESWLVHHGKAYNAIGEKERRFEIFKDNLRFIDEHNRESRSYKVGLTRFADLTNDEYRAMFLGGRFSPMPRLSAAKSSRYATAVGDDLPDDVDWRKKGAVTAVKDQGQCDYPYKARDDTCDPDRKHIKVVEIDGHEDVPEINERLLKTAMAGQPVSVAIEAAIFLCFPSFSSASDSDSPTFSIIDENAKHHMGIPHTLDSDSGGFPHRTHDEIAALFESWLVHHGKAYNSLGEKERRLEIFKDNLNFIDEHNRVPRSYKVGLTCFADLTNDEYRALFLGARFSPLPHLSAADSGSCWAFSAVAAVEGINQIVTGELISLSEQELVDCGRSKFLSGCNGGYMDKAFRFIIDNGGIDTEEDYPYKALDNYTCDPDRININVVSINGYVNVPPGNERLLKMAVAGQPVSVAIDAHSEALQLYKSGVFTGDCGTELDHGVVAVGYGTEDGLDYWIIKNSWSENWGEKGYMKLERNVASTTLGKCGITLMASYPIKL 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5754029 5763131 - Cp4.1LG15g04750.1 Cpe15g00476 481934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00476 511 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 451 461 IPR025660 -
Cpe15g00476 511 SUPERFAMILY Cysteine proteinases 14 181 IPR038765 -
Cpe15g00476 511 PANTHER CYSTEINE PROTEASE 219 301 - -
Cpe15g00476 511 Gene3D Cysteine proteinases 305 511 - -
Cpe15g00476 511 Pfam Cathepsin propeptide inhibitor domain (I29) 20 76 IPR013201 -
Cpe15g00476 511 Pfam Cathepsin propeptide inhibitor domain (I29) 236 292 IPR013201 -
Cpe15g00476 511 Gene3D - 218 300 - -
Cpe15g00476 511 SMART pept_c1 107 509 IPR000668 GO:0006508|GO:0008234
Cpe15g00476 511 Pfam Papain family cysteine protease 312 509 IPR000668 GO:0006508|GO:0008234
Cpe15g00476 511 Pfam Papain family cysteine protease 129 181 IPR000668 GO:0006508|GO:0008234
Cpe15g00476 511 Gene3D Cysteine proteinases 130 194 - -
Cpe15g00476 511 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 219 301 - -
Cpe15g00476 511 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 8 128 - -
Cpe15g00476 511 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 312 510 - -
Cpe15g00476 511 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 129 181 - -
Cpe15g00476 511 PRINTS Papain cysteine protease (C1) family signature 309 324 IPR000668 GO:0006508|GO:0008234
Cpe15g00476 511 PRINTS Papain cysteine protease (C1) family signature 468 474 IPR000668 GO:0006508|GO:0008234
Cpe15g00476 511 PRINTS Papain cysteine protease (C1) family signature 453 463 IPR000668 GO:0006508|GO:0008234
Cpe15g00476 511 Gene3D Cysteine proteinases 4 129 - -
Cpe15g00476 511 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 468 487 IPR025661 -
Cpe15g00476 511 PANTHER CYSTEINE PROTEASE 8 128 - -
Cpe15g00476 511 PANTHER CYSTEINE PROTEASE 312 510 - -
Cpe15g00476 511 PANTHER CYSTEINE PROTEASE 129 181 - -
Cpe15g00476 511 SMART Inhibitor_I29_2 20 76 IPR013201 -
Cpe15g00476 511 SMART Inhibitor_I29_2 236 292 IPR013201 -
Cpe15g00476 511 SUPERFAMILY Cysteine proteinases 228 509 IPR038765 -
Cpe15g00476 511 CDD Peptidase_C1A 313 508 IPR039417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00476 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - cmos:111455476 588.571
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00295 Cpe15g00476 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00449 Cpe-Chr10:2627482 Cpe15g00476 Cpe-Chr15:5754029 5.93E-14 dispersed
Cpe15g00476 Cpe-Chr15:5754029 Cpe16g00415 Cpe-Chr16:5589312 3.53E-19 dispersed
Cpe15g00476 Cpe-Chr15:5754029 Cpe19g00637 Cpe-Chr19:5160213 3.33E-13 wgd
Cpe15g00476 Cpe-Chr15:5754029 Cpe02g00195 Cpe-Chr2:1015211 3.91E-34 wgd
Cpe15g00476 Cpe-Chr15:5754029 Cpe04g00295 Cpe-Chr4:3733287 7.05E-65 wgd
Cpe15g00476 Cpe-Chr15:5754029 Cpe06g00176 Cpe-Chr6:956019 4.90E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00476 Cpe_Chr15 FPKM 0.0 0.0 7.443007 3.127799 0.0 0.0 0.0 0.0 0.31519 0.0