Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00478 ATGTTAAAACATCCCCTCACTTTCTTTTTCTTCCCCTGGCATACTCCTCCTCCGCCTCCAGAATATCCTCCTCCTCCGCCTCCGCTACCACCTCCACCTCCGCCTCCACCTCCACCTCCACCACCTCCGCCTCCTCCTCCACCTCCACCACCTCCGCCTCCGCCTCAAAAACCTTACTGTGCCACTCCATCACCACCACCACCTAAACCAAAAGTCCACCCACCACCGCCGCCTCCTCCGCCGCCACCTCCGCCGCCGCCACCGCCGCCGCCGCCACCGCCGCCGCCACCACCCAAACCAAAAGTGCACCCACCTCCGCCACCTAAAAAAAAATTCCGCCCACCGCCCCGACCGTCGCCGCCGCCGCCATCCATAAGCCCAAGAATCAAAATTGCTTACGAAACCATAAAAGATTTCAAATCCAGAATTGAAGATGACCCATTGAACATAACAAATTCATGGGTAGGAAAAGACGTTTGTAAATACAAAGGATTCATCTGCGACAAAGTCCCCGATTACAAAACCACCGCCTTGGCCGGAGTTAGCTTTAACAACTTCGGATTCGGTGGTTCTAACCTGATTCTCAATGGCTTCATCGACCGTTTGCCCGACATTACTTTCTTCCATGCAAACTCCAACAACTTCTCCGGCATCGTCCCCGAACTCATCTCCGATCTCCGATACTTCTACGAGCTCGATCTCAGCAACAACAAATTCTCCGGCGCCTTCCCTAACCAAGTCCTTGACGCCACCAATCTCACCTTCTTGGATATCCGGTTCAACGACTTCTCCGGTCCCGTCCCCCCCAAGCTCTTCGATATGGACATTATCTCCGCCATCTTCCTTAACAACAACAACATCGGAACCGGAAAGACAAAGAAAACCCTAATCGAGGTTCTCTTCTCCGACAACAAGCTCTCCGGGTGCTTACCGATGGAGATTGGGGTTTTAGAGAACACAATTCTCTTCGACGCAAGCAAGAACACCCTCACCGGCCCGATCCCCTACTCCTTCGGCTGCTTAGCCAAAATGGAAGTTCTCAACTTCGCCGACAACCGCCTCTACGGCGCCATTCCGGAGATGGTCTGCCAGTTACCCCACCTCCAAAACTTCACCCTTCGCAACAACTACTTCACCCAAGTCGGCCCCGTCTGCCGGAGCTTGATCGTAAAAAAGATTATCGACATTTCGGGGAACTGCATTCTCGGGCTGCCGGACCAGAAATCTAAGGAGGAATGTACCCATTTCTTCAGCCATGTTCAGTACTGCCCTGATGAGAAGTCAATGAAGTACATTCCTTGTAAAGGGGTTTGGTACTTGAATGAAGATCCGGCCGCCGCGCTCCGTCGGCCGGCGAGGAAGGCGACGGAGATGAGAACTTACGGGGCTCTTGTCCCGCATTAA 1404 53.56 MLKHPLTFFFFPWHTPPPPPEYPPPPPPLPPPPPPPPPPPPPPPPPPPPPPPPPPQKPYCATPSPPPPKPKVHPPPPPPPPPPPPPPPPPPPPPPPPPKPKVHPPPPPKKKFRPPPRPSPPPPSISPRIKIAYETIKDFKSRIEDDPLNITNSWVGKDVCKYKGFICDKVPDYKTTALAGVSFNNFGFGGSNLILNGFIDRLPDITFFHANSNNFSGIVPELISDLRYFYELDLSNNKFSGAFPNQVLDATNLTFLDIRFNDFSGPVPPKLFDMDIISAIFLNNNNIGTGKTKKTLIEVLFSDNKLSGCLPMEIGVLENTILFDASKNTLTGPIPYSFGCLAKMEVLNFADNRLYGAIPEMVCQLPHLQNFTLRNNYFTQVGPVCRSLIVKKIIDISGNCILGLPDQKSKEECTHFFSHVQYCPDEKSMKYIPCKGVWYLNEDPAAALRRPARKATEMRTYGALVPH 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5769119 5772721 + Cp4.1LG15g04850.1 Cpe15g00478 481936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00478 467 MobiDBLite consensus disorder prediction 21 103 - -
Cpe15g00478 467 PANTHER BNAC05G26270D PROTEIN 94 287 - -
Cpe15g00478 467 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 94 287 - -
Cpe15g00478 467 PRINTS Proline rich extensin signature 52 68 - -
Cpe15g00478 467 PRINTS Proline rich extensin signature 28 49 - -
Cpe15g00478 467 PRINTS Proline rich extensin signature 16 28 - -
Cpe15g00478 467 Gene3D Ribonuclease Inhibitor 133 292 IPR032675 -
Cpe15g00478 467 Gene3D Ribonuclease Inhibitor 293 434 IPR032675 -
Cpe15g00478 467 SUPERFAMILY L domain-like 142 404 - -
Cpe15g00478 467 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 290 465 - -
Cpe15g00478 467 MobiDBLite consensus disorder prediction 21 128 - -
Cpe15g00478 467 PANTHER BNAC05G26270D PROTEIN 290 465 - -
Cpe15g00478 467 MobiDBLite consensus disorder prediction 111 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00478 - - - cmax:111471075 535.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe14g00287 Cpe15g00478 CCT
Cpe01g00429 Cpe15g00478 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00429 Cpe-Chr1:2476975 Cpe15g00478 Cpe-Chr15:5769119 4.78E-111 dispersed
Cpe02g00193 Cpe-Chr2:1005771 Cpe15g00478 Cpe-Chr15:5769119 1.72E-94 dispersed
Cpe04g00293 Cpe-Chr4:3655511 Cpe15g00478 Cpe-Chr15:5769119 0 dispersed
Cpe07g00496 Cpe-Chr7:3241893 Cpe15g00478 Cpe-Chr15:5769119 3.24E-98 dispersed
Cpe11g00139 Cpe-Chr11:748770 Cpe15g00478 Cpe-Chr15:5769119 1.39E-97 dispersed
Cpe14g00287 Cpe-Chr14:1681202 Cpe15g00478 Cpe-Chr15:5769119 2.33E-69 dispersed
Cpe15g00478 Cpe-Chr15:5769119 Cpe04g01084 Cpe-Chr4:9464417 5.30E-66 dispersed
Cpe15g00477 Cpe-Chr15:5767108 Cpe15g00478 Cpe-Chr15:5769119 1.76E-170 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00478 Cpe_Chr15 FPKM 19.619442 22.409163 13.722255 13.715648 10.921461 11.998303 11.599316 18.883348 18.305784 19.714636