Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe15g00480 | ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGCGCCGACCCGGCTGCCAATGGAGGCGGAAATCAGCATGTGACGACGTCGTTGTATGTTGGAGATCTTGACGTGAACGTCACCGATTCCCAGCTTTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTGGATGTGCTAAACTTCACCCCTTTGAATGGGAATCCTATTAGAGTCATGTATTCGCATCGTGACCCTAGCATGCGGAAGAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACATTCTCTGCATTTGGAAACATTCTCTCCTGCAAGGTTGCTACAGATTCGTCTGGGCAGTCTAAAGGCTTTGGTTTCGTACAATTTGATACTGAGGAAGCTGCCTTAAAAGCTATAGAGAAGTTGAATGGTATGCTGCTCAACGACAAGCAGGTGTTCGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTTAACAATGTTTTTGTTAAGAATTTAGCAGAAACTACATCTGAAGAAGATTTGAGGAATATGTTTGGGGAGTTTGGACCAATTACCAGCGTTGTGGTCATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTGAACTTTGAAAATGCAGACGATGCTGCTAGATCTGTTGATGCTCTCAATGGACACAAGGTTGATGGGAAAGAGTGGTACGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAGAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATTTAGATGATACCATCGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATGCAAGGTTGTTATGCGTGATCCCAATGGACTGAGTAGAGGGTCTGGCTTTGTTGCGTTCTCAACTCCTGAAGAGGCTTCTAGAGCTCTTGGAGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTGGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAGTTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCGATGTATCCTCCAGGTGGTCCAGGAATCGGACAACAAATATTTTATGGACAAGCTCCACCTACTATTATTTCATCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCGATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGTGGAAGGCGAGCTGGTGCTATTCAGCAAACCCAGCAGCCTGTTCCAATGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGGCGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGGGATGCTGTCCACCCTCAACCAGTTCCTGTTGGCGCTTTGGCTTCTGCCCTTGCAAATGCAACTCCAGACCAACAGAGAACGATGCTTGGGGAAAACCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGCATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCACCGGAAGCTCTGAAGGCGAAGGTTGCCGAGGCCATGGAGGTTTTAAGAACTGTTGCTCAGCAGACGGGCAATGCAGCTGCTGATCAGTTGGCTTCATTATCCCTGACTGACAACCTTGATTCCTAA | 1956 | 47.14 | MAQVPPQPQVPNSGADPAANGGGNQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLRNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVDALNGHKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDTIDDDKLKELFSAFGTITSCKVVMRDPNGLSRGSGFVAFSTPEEASRALGEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPMMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVAQQTGNAAADQLASLSLTDNLDS | 651 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 5807407 | 5811574 | + | Cp4.1LG15g04820.1 | Cpe15g00480 | 481938 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe15g00480 | 651 | Pfam | Poly-adenylate binding protein, unique domain | 561 | 625 | IPR002004 | GO:0003723 | |
Cpe15g00480 | 651 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 553 | 630 | IPR002004 | GO:0003723 | |
Cpe15g00480 | 651 | PANTHER | RNA BINDING PROTEIN | 18 | 635 | - | - | |
Cpe15g00480 | 651 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cpe15g00480 | 651 | SMART | rrm2_1 | 118 | 190 | IPR003954 | GO:0003676 | |
Cpe15g00480 | 651 | SMART | rrm2_1 | 30 | 103 | IPR003954 | GO:0003676 | |
Cpe15g00480 | 651 | SMART | rrm2_1 | 312 | 385 | IPR003954 | GO:0003676 | |
Cpe15g00480 | 651 | SMART | rrm2_1 | 209 | 281 | IPR003954 | GO:0003676 | |
Cpe15g00480 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 31 | 101 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 210 | 278 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 313 | 382 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 186 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 285 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | SUPERFAMILY | PABC (PABP) domain | 494 | 644 | IPR036053 | GO:0003723 | |
Cpe15g00480 | 651 | CDD | RRM2_I_PABPs | 115 | 191 | IPR045305 | - | |
Cpe15g00480 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 393 | IPR035979 | GO:0003676 | |
Cpe15g00480 | 651 | Gene3D | - | 198 | 291 | IPR012677 | - | |
Cpe15g00480 | 651 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 18 | 635 | - | - | |
Cpe15g00480 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 198 | IPR035979 | GO:0003676 | |
Cpe15g00480 | 651 | CDD | RRM1_I_PABPs | 30 | 109 | - | - | |
Cpe15g00480 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 311 | 389 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | Gene3D | - | 119 | 197 | IPR012677 | - | |
Cpe15g00480 | 651 | CDD | RRM4_I_PABPs | 310 | 389 | - | - | |
Cpe15g00480 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 189 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | CDD | RRM3_I_PABPs | 207 | 286 | - | - | |
Cpe15g00480 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 30 | 626 | IPR006515 | GO:0003723 | |
Cpe15g00480 | 651 | Gene3D | - | 548 | 632 | - | - | |
Cpe15g00480 | 651 | Gene3D | - | 19 | 118 | IPR012677 | - | |
Cpe15g00480 | 651 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | SMART | rrm1_1 | 209 | 281 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | SMART | rrm1_1 | 312 | 385 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | SMART | rrm1_1 | 118 | 190 | IPR000504 | GO:0003723 | |
Cpe15g00480 | 651 | SMART | poly_2 | 565 | 628 | IPR002004 | GO:0003723 | |
Cpe15g00480 | 651 | Gene3D | - | 292 | 398 | IPR012677 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe14g00289 | Cpe15g00480 | CCT | |
Cpe01g00431 | Cpe15g00480 | CCT | |
Cpe14g00289 | Cpe15g00480 | ECH | |
Cpe01g00431 | Cpe15g00480 | ECH | |
Cpe04g00290 | Cpe15g00480 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g02142 | Cpe-Chr1:18036128 | Cpe15g00480 | Cpe-Chr15:5807407 | 0 | dispersed | |
Cpe14g00289 | Cpe-Chr14:1694337 | Cpe15g00480 | Cpe-Chr15:5807407 | 0 | dispersed | |
Cpe15g00480 | Cpe-Chr15:5807407 | Cpe03g01015 | Cpe-Chr3:8291590 | 2.14E-14 | dispersed | |
Cpe08g00113 | Cpe-Chr8:728182 | Cpe15g00480 | Cpe-Chr15:5807407 | 2.52E-24 | transposed | |
Cpe01g00431 | Cpe-Chr1:2489190 | Cpe15g00480 | Cpe-Chr15:5807407 | 0 | wgd | |
Cpe15g00480 | Cpe-Chr15:5807407 | Cpe04g00290 | Cpe-Chr4:3623251 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe15g00480 | K13126 | - | csv:101223017 | 1177.16 |