Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00480 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGCGCCGACCCGGCTGCCAATGGAGGCGGAAATCAGCATGTGACGACGTCGTTGTATGTTGGAGATCTTGACGTGAACGTCACCGATTCCCAGCTTTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTGGATGTGCTAAACTTCACCCCTTTGAATGGGAATCCTATTAGAGTCATGTATTCGCATCGTGACCCTAGCATGCGGAAGAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACATTCTCTGCATTTGGAAACATTCTCTCCTGCAAGGTTGCTACAGATTCGTCTGGGCAGTCTAAAGGCTTTGGTTTCGTACAATTTGATACTGAGGAAGCTGCCTTAAAAGCTATAGAGAAGTTGAATGGTATGCTGCTCAACGACAAGCAGGTGTTCGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTTAACAATGTTTTTGTTAAGAATTTAGCAGAAACTACATCTGAAGAAGATTTGAGGAATATGTTTGGGGAGTTTGGACCAATTACCAGCGTTGTGGTCATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTGAACTTTGAAAATGCAGACGATGCTGCTAGATCTGTTGATGCTCTCAATGGACACAAGGTTGATGGGAAAGAGTGGTACGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAGAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATTTAGATGATACCATCGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATGCAAGGTTGTTATGCGTGATCCCAATGGACTGAGTAGAGGGTCTGGCTTTGTTGCGTTCTCAACTCCTGAAGAGGCTTCTAGAGCTCTTGGAGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTGGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAGTTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCGATGTATCCTCCAGGTGGTCCAGGAATCGGACAACAAATATTTTATGGACAAGCTCCACCTACTATTATTTCATCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCGATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGTGGAAGGCGAGCTGGTGCTATTCAGCAAACCCAGCAGCCTGTTCCAATGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGGCGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGGGATGCTGTCCACCCTCAACCAGTTCCTGTTGGCGCTTTGGCTTCTGCCCTTGCAAATGCAACTCCAGACCAACAGAGAACGATGCTTGGGGAAAACCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGCATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCACCGGAAGCTCTGAAGGCGAAGGTTGCCGAGGCCATGGAGGTTTTAAGAACTGTTGCTCAGCAGACGGGCAATGCAGCTGCTGATCAGTTGGCTTCATTATCCCTGACTGACAACCTTGATTCCTAA 1956 47.14 MAQVPPQPQVPNSGADPAANGGGNQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLRNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVDALNGHKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDTIDDDKLKELFSAFGTITSCKVVMRDPNGLSRGSGFVAFSTPEEASRALGEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPMMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVAQQTGNAAADQLASLSLTDNLDS 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5807407 5811574 + Cp4.1LG15g04820.1 Cpe15g00480 481938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00480 651 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Cpe15g00480 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Cpe15g00480 651 PANTHER RNA BINDING PROTEIN 18 635 - -
Cpe15g00480 651 MobiDBLite consensus disorder prediction 1 23 - -
Cpe15g00480 651 SMART rrm2_1 118 190 IPR003954 GO:0003676
Cpe15g00480 651 SMART rrm2_1 30 103 IPR003954 GO:0003676
Cpe15g00480 651 SMART rrm2_1 312 385 IPR003954 GO:0003676
Cpe15g00480 651 SMART rrm2_1 209 281 IPR003954 GO:0003676
Cpe15g00480 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Cpe15g00480 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Cpe15g00480 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 382 IPR000504 GO:0003723
Cpe15g00480 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Cpe15g00480 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Cpe15g00480 651 SUPERFAMILY PABC (PABP) domain 494 644 IPR036053 GO:0003723
Cpe15g00480 651 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cpe15g00480 651 SUPERFAMILY RNA-binding domain, RBD 208 393 IPR035979 GO:0003676
Cpe15g00480 651 Gene3D - 198 291 IPR012677 -
Cpe15g00480 651 PANTHER POLYADENYLATE-BINDING PROTEIN 18 635 - -
Cpe15g00480 651 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Cpe15g00480 651 CDD RRM1_I_PABPs 30 109 - -
Cpe15g00480 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 389 IPR000504 GO:0003723
Cpe15g00480 651 Gene3D - 119 197 IPR012677 -
Cpe15g00480 651 CDD RRM4_I_PABPs 310 389 - -
Cpe15g00480 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Cpe15g00480 651 CDD RRM3_I_PABPs 207 286 - -
Cpe15g00480 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cpe15g00480 651 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 626 IPR006515 GO:0003723
Cpe15g00480 651 Gene3D - 548 632 - -
Cpe15g00480 651 Gene3D - 19 118 IPR012677 -
Cpe15g00480 651 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cpe15g00480 651 SMART rrm1_1 209 281 IPR000504 GO:0003723
Cpe15g00480 651 SMART rrm1_1 312 385 IPR000504 GO:0003723
Cpe15g00480 651 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cpe15g00480 651 SMART poly_2 565 628 IPR002004 GO:0003723
Cpe15g00480 651 Gene3D - 292 398 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe14g00289 Cpe15g00480 CCT
Cpe01g00431 Cpe15g00480 CCT
Cpe14g00289 Cpe15g00480 ECH
Cpe01g00431 Cpe15g00480 ECH
Cpe04g00290 Cpe15g00480 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02142 Cpe-Chr1:18036128 Cpe15g00480 Cpe-Chr15:5807407 0 dispersed
Cpe14g00289 Cpe-Chr14:1694337 Cpe15g00480 Cpe-Chr15:5807407 0 dispersed
Cpe15g00480 Cpe-Chr15:5807407 Cpe03g01015 Cpe-Chr3:8291590 2.14E-14 dispersed
Cpe08g00113 Cpe-Chr8:728182 Cpe15g00480 Cpe-Chr15:5807407 2.52E-24 transposed
Cpe01g00431 Cpe-Chr1:2489190 Cpe15g00480 Cpe-Chr15:5807407 0 wgd
Cpe15g00480 Cpe-Chr15:5807407 Cpe04g00290 Cpe-Chr4:3623251 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00480 K13126 - csv:101223017 1177.16