Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00486 ATGGGTATGTTTTCAAAGCCAAAAATCTTTAGAACAGGAACGACCCATAATGATTCGATGGGTTTTAATGGGGTTTCTCCAGCAAGCAAGTGGAAATGGACCCATTTCTTGCCTCTGTTTGTAGCGATGGTGGTCATAGCAGAGATCGCTTCTCTAAGTCGGCTCGATATCGCGAAAAATGCGGCTATGGTGGACTCTTGGGTCGACTTATTCTATGGACCTCCGCCTTTGCAAGAAGAAATCGAAGATGTTAGCACTGGAATCACAATTGATGGAGTAATGGGTAGAGTTAACTGTGAGGAGTGGCTGGAGAAGGTGGATGCGGTGGAGTACTCTAGGGACTTCAAAAGGAAACCTGTTTTGGTTTCTGGGTCCGAGAAGGATTGGAAAACTTGTGATGTGGGATGCCAGTTTGGATTGAATCCTGGTGAGCAGCCTGATGCTGCATTGGGATCACCTCAACAAGGTCGAGTTGCTAGCGTCCTTCGGTCGATGGAATCGTCGCATTACTATCCAGAGAACAATATTGATTTGGCAAGACGGAAGGGTTACACTGTGGTTATGACCACTAGTCTTTCATCAGATGTTCCTGTTGGATATTTTTCGTGGGCAGAATACGACATAATGGCACCAGTGCAACCAAAGACCGAGCCTGCCCTTGCAGCTGCCTTCATTTCGAATTGTGGCGCGCGCAACTTTCGTTTGCAAGCTCTTGAAGCACTTGAGAAATTGGATGTCAAAATTGATTCATATGGTAGTTGCCACAGGAACCGCGATGGAAGAGTTGACAAAGTGGAAACTTTGAAGCGCTACAAGTTCAGCTTGGCTTTCGAGAATTCCAATGAGGAAGATTATGTCACAGAAAAGTTTTTTCAATCTCTTGTTGCAGGAACTATTCCGGTGGTGGTTGGTACTCCAAATATCAAGGAGTTTGCTCCTTCTCCTGATTCATATTTGCATATCAAGGAAATTTCCGATGTCGAGTCGGTTGCCAAGTCCATGAAATACCTCGCAGAGAATCCCAAAATGTACAATCAATCACTAAGATGGAAGCACGATGGTCCATCCGATTCGTTCAAGGCCCTTGTCGATATGGCAGCAGTACACTCATCGTGTCGCCTTTGCATCCACTTAGCAACCATCATCCACGAGAAAGAAGAAACCAGTCCCGAGTTCAAGAAACGACCGTGCAAGTGCTCTCGTGGCTCCGAAACGGTGTATCATTTATACGTAAGGGAGAGAGGGCGGTTCGAAATGCAATCCATTTTCTTGAGGTCGGGAAATTTAACGTTGGAGGCTTTAGAATCGAGAGTACTCGAAAAGTTCAAGTCTTTGAAACATGTCCCAATTTGGAAGCAAGAACGGCCTGAAAGCTTAAGAGGAGGAGATAAACTTAAGCTATATAGGATATATCCTGTTGGGTTGACACAGAAGCAGGCTTTATATACCTTCAGATTCAAAGGTAATGATGATTTCAAAACTCACATAGAAACACACCCTTGTGCTAAGATGGAAATCATATTTGTCTGA 1530 44.58 MGMFSKPKIFRTGTTHNDSMGFNGVSPASKWKWTHFLPLFVAMVVIAEIASLSRLDIAKNAAMVDSWVDLFYGPPPLQEEIEDVSTGITIDGVMGRVNCEEWLEKVDAVEYSRDFKRKPVLVSGSEKDWKTCDVGCQFGLNPGEQPDAALGSPQQGRVASVLRSMESSHYYPENNIDLARRKGYTVVMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEPALAAAFISNCGARNFRLQALEALEKLDVKIDSYGSCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGTPNIKEFAPSPDSYLHIKEISDVESVAKSMKYLAENPKMYNQSLRWKHDGPSDSFKALVDMAAVHSSCRLCIHLATIIHEKEETSPEFKKRPCKCSRGSETVYHLYVRERGRFEMQSIFLRSGNLTLEALESRVLEKFKSLKHVPIWKQERPESLRGGDKLKLYRIYPVGLTQKQALYTFRFKGNDDFKTHIETHPCAKMEIIFV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5844027 5850343 + Cp4.1LG15g04780.1 Cpe15g00486 481944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00486 509 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 381 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cpe15g00486 509 Gene3D - 165 358 IPR038577 -
Cpe15g00486 509 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 104 384 - -
Cpe15g00486 509 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 33 486 - -
Cpe15g00486 509 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 33 486 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00486 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101205170 912.909
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00439 Cpe15g00486 CCT
Cpe14g00294 Cpe15g00486 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00293 Cpe-Chr14:1719598 Cpe15g00486 Cpe-Chr15:5844027 0 dispersed
Cpe14g00294 Cpe-Chr14:1726751 Cpe15g00486 Cpe-Chr15:5844027 3.81E-46 dispersed
Cpe01g00439 Cpe-Chr1:2526392 Cpe15g00486 Cpe-Chr15:5844027 1.36E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01481 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.0 3.0e-155 545.8
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.0 6.5e-150 528.1
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.6e-148 523.5
Cpe01g01481 . 81 569 Xyloglucan Fucosyltransferase1 AT1G14100 56.9 3.4e-164 575.5
Cpe20g00012 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.1 2.5e-159 559.3
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 1.4e-157 553.5
Cpe01g01481 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 4.3e-137 485.3
Cpe20g00012 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.7e-133 473.4
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Cpe14g00293 . 30 369 Xyloglucan Fucosyltransferase1 AT1G49710 69.5 7.6e-140 494.6
Cpe13g00716 CCT 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 4.0e-168 588.2
Cpe01g02150 . 7 413 Xyloglucan Fucosyltransferase1 AT1G71990 66.9 1.8e-160 562.8
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 9.0e-203 703.7
Cpe02g01051 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.6 3.4e-186 648.7
Cpe20g00012 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 7.9e-183 637.5
Cpe14g00402 . 13 504 Xyloglucan Fucosyltransferase1 AT2G03220 53.0 5.2e-150 528.5
Cpe01g01481 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.0e-152 535.8
Cpe20g00012 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 2.1e-145 513.1
Cpe01g01481 . 101 568 Xyloglucan Fucosyltransferase1 AT2G15370 52.3 9.6e-146 514.2
Cpe20g00012 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.6 3.9e-139 492.3
Cpe01g01481 . 92 568 Xyloglucan Fucosyltransferase1 AT2G15390 53.3 1.9e-149 526.6
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.7 3.8e-142 502.3
Cpe02g01051 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 7.2e-141 498.0
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 65.1 1.6e-190 662.9
Cpe14g00293 . 42 369 Xyloglucan Fucosyltransferase1 AT3G19280 75.3 9.1e-146 514.2
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 9.0e-203 703.7
Cpe02g01051 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.6 3.4e-186 648.7
Cpe20g00012 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 7.9e-183 637.5
Cpe14g00402 . 13 504 Xyloglucan Fucosyltransferase1 AT2G03220 53.0 5.2e-150 528.5
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 92 568 Xyloglucan Fucosyltransferase1 AT2G15390 53.3 1.9e-149 526.6
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.7 3.8e-142 502.3
Cpe02g01051 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 7.2e-141 498.0
Cpe01g01481 . 101 568 Xyloglucan Fucosyltransferase1 AT2G15370 52.3 9.6e-146 514.2
Cpe20g00012 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.6 3.9e-139 492.3
Cpe01g01481 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.0 3.0e-155 545.8
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.0 6.5e-150 528.1
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.6e-148 523.5
Cpe01g01481 . 81 569 Xyloglucan Fucosyltransferase1 AT1G14100 56.9 3.4e-164 575.5
Cpe20g00012 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.1 2.5e-159 559.3
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 1.4e-157 553.5
Cpe01g01481 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 4.3e-137 485.3
Cpe20g00012 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.7e-133 473.4
Cpe01g01481 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.0e-152 535.8
Cpe20g00012 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 2.1e-145 513.1
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 65.1 1.6e-190 662.9
Cpe14g00293 . 42 369 Xyloglucan Fucosyltransferase1 AT3G19280 75.3 9.1e-146 514.2
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Cpe14g00293 . 30 369 Xyloglucan Fucosyltransferase1 AT1G49710 69.5 7.6e-140 494.6
Cpe13g00716 CCT 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 4.0e-168 588.2
Cpe01g02150 . 7 413 Xyloglucan Fucosyltransferase1 AT1G71990 66.9 1.8e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00486 Cpe_Chr15 FPKM 8.673175 11.111884 13.994301 14.002765 11.664402 11.798483 11.507977 19.97171 18.374069 17.872852