Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00494 ATGGTGGAATCGAACTTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTCAACAAGCTAGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAGCAGCTAAAGCGTCCTCGTCAGCCACTCGATATCTCGTCCTTAAGTGTGAGAAGATCCAGCCGTTTTGCGGATAAGCCCCCTCCAAGCTATAAGGAGGAGCCCATTGAACCACTTGCAGGTTTAAGAAGGACTTATCAAAGGAGGGATTTGTTGAATCGGGTTTATGCTTCAGATGTGGAAAGGCAATATGCCATTGACAGAGCACGAGACCTTCAATCTAGCCTAGAATCTAGATACCCAAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACCGGGGGATTTTGGCTGGGTCTTCCAGTTCATTTTTGCAAGGCACACCTTCCCCTTGAGGATGAAATGTTAACTCTGGTGGACGAGGATGAAAATGAGTTCCAAACAAAATACCTTGCCGAAAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATACTTTGGTGTTTCAGTTAACTAAGCCGACTGAATTCAAGGTGTATATCATCAGGGCATACAATTTAGAAGACAAAGAAAACACCCATGGGGATTCTGATGTCACCCAATTGGAAAGAAATGGCAAAGGAAATACTGGATCAGGTAAAGGAGATCACGGCGAGGATTCAAACGTATCCCTCTTGGAAAAAAGTGGTAAAAAGGTTACTAGATCATCGGGGCGTAAAACCAGGGCTAATAAATCTGAAGATAAAGCAGCTAACGGCGAGGATTCTGGTGTCTCCCAGTTGGAAACAAGTGGCAAAAGAACTACAAGATCAGCAAGTAAAGGGAAAAAGTAG 936 44.87 MVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPTKQLKRPRQPLDISSLSVRRSSRFADKPPPSYKEEPIEPLAGLRRTYQRRDLLNRVYASDVERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVHFCKAHLPLEDEMLTLVDEDENEFQTKYLAEKTGLSGGWRGFSIDHQLVDGDTLVFQLTKPTEFKVYIIRAYNLEDKENTHGDSDVTQLERNGKGNTGSGKGDHGEDSNVSLLEKSGKKVTRSSGRKTRANKSEDKAANGEDSGVSQLETSGKRTTRSASKGKK 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5895248 5898453 - Cp4.1LG15g04980.1 Cpe15g00494 481952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00494 311 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 2 230 - -
Cpe15g00494 311 SMART B3_2 128 219 IPR003340 GO:0003677
Cpe15g00494 311 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 230 IPR044837 -
Cpe15g00494 311 MobiDBLite consensus disorder prediction 31 83 - -
Cpe15g00494 311 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
Cpe15g00494 311 Coils Coil 6 33 - -
Cpe15g00494 311 MobiDBLite consensus disorder prediction 32 65 - -
Cpe15g00494 311 Pfam B3 DNA binding domain 128 218 IPR003340 GO:0003677
Cpe15g00494 311 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Cpe15g00494 311 MobiDBLite consensus disorder prediction 226 311 - -
Cpe15g00494 311 Gene3D - 104 220 IPR015300 -
Cpe15g00494 311 CDD B3_DNA 126 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01126 Cpe-Chr5:7613215 Cpe15g00494 Cpe-Chr15:5895248 1.03E-40 dispersed
Cpe15g00494 Cpe-Chr15:5895248 Cpe02g00152 Cpe-Chr2:782926 4.91E-08 dispersed
Cpe01g00450 Cpe-Chr1:2603336 Cpe15g00494 Cpe-Chr15:5895248 1.32E-41 wgd
Cpe15g00494 Cpe-Chr15:5895248 Cpe04g00274 Cpe-Chr4:3411573 2.83E-142 wgd
Cpe15g00494 Cpe-Chr15:5895248 Cpe07g00470 Cpe-Chr7:3015036 3.12E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50616 PF02362 B3 1.40E-15 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00494 - - cmax:111471078 577.785