Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00502 TCCCGGTTCTCCGGTCACTGGCTTCCTTCGCTCCGGCCATTCGTCAGTATTTTCTTTCACTCTCCTGCAACGAATCCGATCGTTCTTCACAACAGAGATACCTTAACGTCCTCCAATCCGACGGAATACGGCGGAGATGGGCCCACCCAAAACCCTCCGCGGGATCTCACAGGAAGCCTTCGACGAGGTGGGATGGATCCGACTGAAGCTCTGCAGGATGCAATAGAAACATTAACTCTCCAAGGCGTTGATCTCTCAGGCATTGTGAGATGCGTTCCTGGAGAGGGTAGCGTGAATGATAATCCATTGGTACAGAGCTTGGAGAGGCTGAAACAATTGGACGGTGATTCGAAGGATAGAATCAGTGATGAGTATCTTGACGAGATGGTGGATTTATTTGATAGGATATCGGAGCTGTGTGGATCGAATGAGGAATCTGGAAATGTGTCGATTGTATTAAGAAATGGGGGATTAGAATTGCTCTGTTCTCTTTGTTGTAAGATTCCAAGTGAATGCCGGCGTGCTGTTGCTTCCGCTTTGAAGACAATGGTGTTATTGCTTCAAGATTTACACAGTACAGAAATATTTCGTAACAGCAATGGACCCAAAATTGTAATGGATGTTCTAAATAATGGCAAGGAAAATGTAGACATTTTACATGGTGGCTTTGCTGTGGTTGCTGCGGCTGCAACTGCTAATGAGGTTCTTAAAGAAATATTCATGGAGATGAACATTGATGAGCTTATTTTGCAGACTCTGAGTACGCACAGAGGTGACTGTATTAGTAGCTTATATGATGCTATTCGGGTTCTGCTGACACCTGATGACAATCGTGTTTATGGTTATGCCAGAAGATTTGCCAAAATTGGAATTGCTAATGCTCTTGTCGACTCGCTACATGGAGGACTTAACTCGGCCGGTCTAGTTTCTGCGAGCATTGCTTTAAAGGCTGTTGCTGTTAATGATGAAATTTGTAAATCCATTGCTGAAAATGGTGGTATTGATGCAGTTCTGAGATGCATTGACGACAGTGGTGATCAAGGCAATAAAATGGTAGCTAAAGTTTGCTGTTCTTTGTTATCAAAGTTGGCAGGAAGTGACGCTAATAAGAGCGCTATTATTGAAAAGAAAGGATTGGATAAACTAATCAAGCTTTCATCCAGATTTAGTGATGATCCATCTGTTCTGCAAGAGGTAATGTCGATCATATCAGTGCTTACTTTGAGATCTCCAGAAAATGCAACACGTGCAATTGAAGCTGGAGCTGGAGATCTTGCCATTCAAGCTATGCAGAAATTCCCTTCAGCTCAACAAATGCAAAGGAACTCCTGCCACATGATACGAAATCTTGTTGTCAGGAACCCGGAAAACAGAGCTCTTTTGCTCAAAAACGGAATCGAGAAATACATTCGAAAAGCGAAGCAAAACCATGAAAGCTGCAAGGATGCTGCAAGTGATGCATTAAGGGACTTGGGGCTTGACAATTATCTGTAG 1494 43.37 SRFSGHWLPSLRPFVSIFFHSPATNPIVLHNRDTLTSSNPTEYGGDGPTQNPPRDLTGSLRRGGMDPTEALQDAIETLTLQGVDLSGIVRCVPGEGSVNDNPLVQSLERLKQLDGDSKDRISDEYLDEMVDLFDRISELCGSNEESGNVSIVLRNGGLELLCSLCCKIPSECRRAVASALKTMVLLLQDLHSTEIFRNSNGPKIVMDVLNNGKENVDILHGGFAVVAAAATANEVLKEIFMEMNIDELILQTLSTHRGDCISSLYDAIRVLLTPDDNRVYGYARRFAKIGIANALVDSLHGGLNSAGLVSASIALKAVAVNDEICKSIAENGGIDAVLRCIDDSGDQGNKMVAKVCCSLLSKLAGSDANKSAIIEKKGLDKLIKLSSRFSDDPSVLQEVMSIISVLTLRSPENATRAIEAGAGDLAIQAMQKFPSAQQMQRNSCHMIRNLVVRNPENRALLLKNGIEKYIRKAKQNHESCKDAASDALRDLGLDNYL 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5958496 5964689 + Cp4.1LG15g04930.1 Cpe15g00502 481960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00502 497 SUPERFAMILY ARM repeat 144 490 IPR016024 -
Cpe15g00502 497 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 6 64 492 IPR040104 -
Cpe15g00502 497 MobiDBLite consensus disorder prediction 31 56 - -
Cpe15g00502 497 Gene3D - 135 496 IPR011989 -
Cpe15g00502 497 PANTHER UNCHARACTERIZED 64 492 - -
Cpe15g00502 497 SMART arm_5 145 185 IPR000225 GO:0005515
Cpe15g00502 497 SMART arm_5 366 408 IPR000225 GO:0005515
Cpe15g00502 497 SMART arm_5 410 452 IPR000225 GO:0005515
Cpe15g00502 497 SMART arm_5 321 365 IPR000225 GO:0005515
Cpe15g00502 497 MobiDBLite consensus disorder prediction 31 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00502 K24166 ARMC6; armadillo repeat-containing protein 6 - csv:101208447 758.059
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00502 Cpe-Chr15:5958496 Cpe04g00268 Cpe-Chr4:3344480 1.01E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g463 . . . . . . . . Cmo19g00638 . . . . . Sed10g2047 . Cpe15g00502 Bhi05g01139 Tan02g0886 Cmetu01g2178 . Hepe02g0570 . . Cla02g00582 Cam02g0615 Cec02g0614 Cco02g0630 Clacu02g0611 Cmu02g0608 Cre02g0939 Cone12ag1109 Cone8ag1150 . . . Csa07g00779 . Cme01g00032 Blo04g00492 . . Bda14g00522 Bpe15g00892 . Bma03g00523 . . . . . Cma19g00620 . Car19g00472 . . . . . . . . . . . . . . . . Lsi11g01024 . Chy01g00037 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009606 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00502 Cpe_Chr15 FPKM 3.132558 1.826182 0.750443 0.405769 6.276662 5.73741 6.446412 7.139856 7.044163 7.511247