Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00508 ATGAAGGAGTTTGATCAAGCCTTCATCCAAGCCCCGGAGCACCGCCCCAATCTCTCCGCCGTTGAATCCGACGGCATCCCCATCATCGACCTCTCTCCGATCTTCAACTCCCCCGACGGTACCTTCCCCGACGATTTGGTCCGACAAATCGCCTCTGCTTCCATAGACTGGGGATTCTTTCTTGTGGTCAACCACGGCGTCCCCGCCGAGAAGCGGCGGCGGATGGAGGCCGCGTCTCGGGAGTTTTTCGAGCGGAGTTTGGAAGAGAAGAGAACAGTGATGAAAGTGGAAGGGATGGTCACTGGCTATTCTGATATGGAGCTCACCAAGAACGTTAGAGATTGGAAGGAGGTCTTTGATTTCATTGTGGCCGATCCCACCGTCGTCCCCGTGTCGCCCGAGCCTGATGATCATCGGTTGACTCATTGGACCAATCGATGGCCGACATACATGCCGGAATTCAGAGAGGCTGGTAAGGAATATGCCGAAGAATTAGAGAAACTTGGCCACAAATTAGTGGAACTTATCGCGGTTAGCTTGGGATTACCGGCGCAAAGGTTTCGAGATTATTTCAAAGAGAAAACAAGTATGGTGAGACTGAATCATTATCCTCCATGCTCGTTGCCAGAAATGGCTCTCGGTGTGGGTCGTCACAATGACCCCGGCGTCTTAACGATGCTTGCCCAAGACGATGTCGGAGGGCTAGAAGTGAAAAGGAAAAGAGATGGAGAGTGGATTCGGGTCAAACCCGTACCCGATTCTTACGTCGTCAATGTTGGCAACGTTACTCAGGTTTGGAGCAATGAGAGGTACGAGAGCGTGGAGCATAGGGTTATGGTAAACGACAAAAAGGAAAGATATTCCATTGCGTTCTTCTTCAACCCATCTCATTCCACCATTGTCGAACCTTTGGAAGAACTCATCGATCCCGAAAACCCTCCGAAATACCAATCGTACTTATGGGGGAAGCTTCTTTTTAATAAATGTGCAAGGCTTTCAAGAGACTTAAAGCTGTAA 1017 50.05 MKEFDQAFIQAPEHRPNLSAVESDGIPIIDLSPIFNSPDGTFPDDLVRQIASASIDWGFFLVVNHGVPAEKRRRMEAASREFFERSLEEKRTVMKVEGMVTGYSDMELTKNVRDWKEVFDFIVADPTVVPVSPEPDDHRLTHWTNRWPTYMPEFREAGKEYAEELEKLGHKLVELIAVSLGLPAQRFRDYFKEKTSMVRLNHYPPCSLPEMALGVGRHNDPGVLTMLAQDDVGGLEVKRKRDGEWIRVKPVPDSYVVNVGNVTQVWSNERYESVEHRVMVNDKKERYSIAFFFNPSHSTIVEPLEELIDPENPPKYQSYLWGKLLFNKCARLSRDLKL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6018436 6019998 - Cp4.1LG15g05120.1 Cpe15g00508 481966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00508 338 Pfam 2OG-Fe(II) oxygenase superfamily 196 295 IPR044861 -
Cpe15g00508 338 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 149 IPR026992 -
Cpe15g00508 338 Gene3D - 1 334 IPR027443 -
Cpe15g00508 338 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 2 325 - -
Cpe15g00508 338 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 295 IPR005123 -
Cpe15g00508 338 PRINTS Isopenicillin N synthase signature 50 67 - -
Cpe15g00508 338 PRINTS Isopenicillin N synthase signature 218 239 - -
Cpe15g00508 338 PRINTS Isopenicillin N synthase signature 283 301 - -
Cpe15g00508 338 SUPERFAMILY Clavaminate synthase-like 4 330 - -
Cpe15g00508 338 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE, NON-HEME DIOXYGENASE DOMAIN-CONTAINING PROTEIN-RELATED 2 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00508 - - - csv:101209423 512.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00508 Cpe-Chr15:6018436 Cpe05g00698 Cpe-Chr5:4294182 4.28E-40 dispersed
Cpe20g00384 Cpe-Chr20:2164518 Cpe15g00508 Cpe-Chr15:6018436 3.00E-48 dispersed
Cpe15g00508 Cpe-Chr15:6018436 Cpe15g00509 Cpe-Chr15:6021892 1.99E-171 tandem
Cpe11g01135 Cpe-Chr11:9424979 Cpe15g00508 Cpe-Chr15:6018436 3.84E-33 transposed
Cpe14g00931 Cpe-Chr14:7829846 Cpe15g00508 Cpe-Chr15:6018436 1.73E-37 transposed
Cpe15g00508 Cpe-Chr15:6018436 Cpe04g00259 Cpe-Chr4:3204128 8.38E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g477 . . . . . . . . Cmo19g00644 . . . . . . . Cpe15g00508 Bhi05g01158 . . . Hepe06g0397 . . . . . . . . . . . . . . Csa07g00790 . . . . . Bda14g00528 . . . . . . . Cma11g01775 Cma19g00626 . Car19g00478 . . . . . . . . . . . . . . . . Lsi11g01036 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00508 Cpe_Chr15 FPKM 0.499033 1.150968 0.0 0.0 1.222455 0.0 1.346293 0.0 0.0 0.0