Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00509 ATGGACGATTTCGATCAGGCCTTCATCCAAGCCCCCGAGCACCGCCCCAAGCTATCCGACCCCGAAGCCGACGGCATCCCCACCGTCGACCTCTCTCCGATCTTCAACTCCCCCGACGGTACCTTCCCCGATGATTTGGTCCGACAAATCGCCTCTGCTTCCGCAGACTGGGGATTCTTTTTTGTGGTCAACCACGGCGTCCCCCCCGAGAAGCAGCGCCGGATCGAGGCCGCTGCCCGGGTGTTTTTCGGGCAGAGTTTGGAAGAGAAGAGGAAAGTGAGGAGAGATGAAGGGCTAGTGACCGGCTACTCTAATACGGAGCTCACCAAGAATGTCAGAGATTGGAAGGAGGTGTTTGATTTCGTTGTGGCTGATCCCACCGTCGTTCCGGCGTCGCCGGAGCCTGATGATGACCAGAAGGCTTGCGAGGAATATGTTGAAGAACTGGAGAAGCTTGGCCACAAATTAATGGAATTGCTCGCCGTTAGCTTGGGATTACCGGCGGAGAGATTTCGAGATTATTTCAAAGAGACGACGAGTTTTGGGAGACTGAATCACTATCCGCCGTGCCCTTCGCCGGAGCTAGCTCTCGGCGTCGGCCGCCATAAGGACCCTGGCGTCTTGACGGTGCTTGCCCAAGACGACGAAGTGGAAGGGCTGGAAGTGAAAAGGAAGAGAGATGGAGAGTGGATTCGGGCTTGGAGCAATGAGAGGTACGAGAGCGTGGAGCATAGAGCTATGGTTAACCACAAAAGGGAAAGATATTCCATTGCCTTCTTCTTCAACCCATCTCACTCCACCATTGTCGAGCCTTTGAAAGAACTCATAGATCCCGAAAACCCTCCCAAATACAAATCTTACTCATGGGGGAAGTACCTTTCGAATAGAATGCTCAGTAACTTTAAGAAACTGAATGCCGACAACATTCAAGTTTCTCACTTTAAGATCTCTAACTAG 957 52.46 MDDFDQAFIQAPEHRPKLSDPEADGIPTVDLSPIFNSPDGTFPDDLVRQIASASADWGFFFVVNHGVPPEKQRRIEAAARVFFGQSLEEKRKVRRDEGLVTGYSNTELTKNVRDWKEVFDFVVADPTVVPASPEPDDDQKACEEYVEELEKLGHKLMELLAVSLGLPAERFRDYFKETTSFGRLNHYPPCPSPELALGVGRHKDPGVLTVLAQDDEVEGLEVKRKRDGEWIRAWSNERYESVEHRAMVNHKRERYSIAFFFNPSHSTIVEPLKELIDPENPPKYKSYSWGKYLSNRMLSNFKKLNADNIQVSHFKISN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6021892 6026835 - Cp4.1LG15g05140.1 Cpe15g00509 481967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00509 318 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 177 263 IPR005123 -
Cpe15g00509 318 Gene3D - 1 303 IPR027443 -
Cpe15g00509 318 SUPERFAMILY Clavaminate synthase-like 4 302 - -
Cpe15g00509 318 Pfam 2OG-Fe(II) oxygenase superfamily 183 263 IPR044861 -
Cpe15g00509 318 MobiDBLite consensus disorder prediction 7 21 - -
Cpe15g00509 318 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 130 IPR026992 -
Cpe15g00509 318 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE, NON-HEME DIOXYGENASE DOMAIN-CONTAINING PROTEIN-RELATED 3 308 - -
Cpe15g00509 318 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 3 308 - -
Cpe15g00509 318 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00509 - - - csv:101209423 493.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00259 Cpe-Chr4:3204128 Cpe15g00509 Cpe-Chr15:6021892 5.59E-114 dispersed
Cpe15g00509 Cpe-Chr15:6021892 Cpe12g00002 Cpe-Chr12:8040 5.74E-48 dispersed
Cpe15g00508 Cpe-Chr15:6018436 Cpe15g00509 Cpe-Chr15:6021892 1.99E-171 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g481 . . . . . . . . Cmo19g00645 . . . . . . . Cpe15g00509 Bhi05g01160 . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00529 . . . . . . . . Cma19g00627 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00509 Cpe_Chr15 FPKM 0.049111 0.0 0.0 0.136143 0.251394 0.0 0.0 0.0 0.0 0.0