Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00516 ATGACTTCATCTTCTTCCTCAGAGCATCCACCGGCTCCCCTGTCTCTGAAACCCATCCCCGGCGGCTATGGCCTCCCCTTCTTTGGACCCATCAAATCTCGCTATGATTACTTCTACTTTCAGGGGAGAGAAAAGTTCTTCCGATCTCGAATGGCCCAATACGGCTCCACCGTGTTCCGAACCAACATGCCGCCGGGCCCCTTCATCTCCTCCGATTCCAGAGTCGTCGTCCTCCTCGACGCCCGGAGCTTTCCGATCCTTTTCGACACTACTAAGGTTGAGAAACGGAATGTTCTCGACGGAACTTACATGCCCTCCGTCTCCTTCACCGGCGGAATTCGCACCTGCGCTTTTTTAGACCCTAAGCTGGAAAAGGAATTGGAAAAGAATAACGCTGCAGATTTCAACTCTGTTTCCGATGCGGCGTCGTTTGACTTCATTTTCCGGTTGCTCTCCGATGGAAAACCCGATGAGAAACTCGGCTCCGATGGACACAGTTTGGTTGATCGATGGCTTATTATGCAGCTCGCTCCATTAGCCACTCTGGGTTTGCCCAAATTCCTCAGCTGCTTTGAAGATCTCATCATCCATACCTTCCCTCTGCCATTCGCGCTCGTCAAGAACGCTTACAGGAAGCTTTACGATGCATTTTACGACTCGTCGGAGACATTTCTAAACGAAGCCGAAAAACAGGGGATAAACAGAGAGAAAGCATGTCACAATTTAGTGTTCTTGGCCGGATTCAACGCATACGCCGGAATGAAAGTGTTGTTACCAATTATACTAAACTGGGTCGGATCCGCCGGTAAGGAGCTTCACCGGAAACTCGCCGGCGAAATTAGAGCCGCCGTGAAGGAAAACAGAGGACTAACATTCACCGCCATAGAGAACATGAGTTTACTGAAATCCGTCGTGTACGAGGTTCTGAGAATCGACCCGCCGGTGCCGTACCAGTACGCGAAGGCGAAACAGGACATTATAATCGAGAGCCATGATTCGGCTTTCGAGATCAAGAAAGGGGAGATGATTTTTGGGTATCAGCCGATCGCCACTAGAGATCCGAAGGTGTTTGAGAAGCCGGAGGAGTTTATCGGCGACAGGTTCGTCGGAGAGGAAGGGGAGAAGCTTTTGAAGTATGTTTACTGGTCAAATGGCCGGGAGACGGAGGAGCCCACGACGGAGAATAAGCAGTGTCCGGCGAGGGATCTGGTGGTGCTGGTGTCCAGAGTAGTTTTGGCGGAGCTTTTCCTCCGTTACGACACGTTCGCCGTCGAGGGAACTCAGTCGTCGTTGGGTTGGTCCGTTAAGGTGAAATCGTTGACCAAAGCCTAA 1332 51.28 MTSSSSSEHPPAPLSLKPIPGGYGLPFFGPIKSRYDYFYFQGREKFFRSRMAQYGSTVFRTNMPPGPFISSDSRVVVLLDARSFPILFDTTKVEKRNVLDGTYMPSVSFTGGIRTCAFLDPKLEKELEKNNAADFNSVSDAASFDFIFRLLSDGKPDEKLGSDGHSLVDRWLIMQLAPLATLGLPKFLSCFEDLIIHTFPLPFALVKNAYRKLYDAFYDSSETFLNEAEKQGINREKACHNLVFLAGFNAYAGMKVLLPIILNWVGSAGKELHRKLAGEIRAAVKENRGLTFTAIENMSLLKSVVYEVLRIDPPVPYQYAKAKQDIIIESHDSAFEIKKGEMIFGYQPIATRDPKVFEKPEEFIGDRFVGEEGEKLLKYVYWSNGRETEEPTTENKQCPARDLVVLVSRVVLAELFLRYDTFAVEGTQSSLGWSVKVKSLTKA 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6083290 6089475 + Cp4.1LG15g05200.1 Cpe15g00516 481974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00516 443 PANTHER CYTOCHROME P450 26 14 424 - -
Cpe15g00516 443 SUPERFAMILY Cytochrome P450 15 428 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe15g00516 443 Pfam Cytochrome P450 270 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe15g00516 443 PRINTS E-class P450 group IV signature 351 369 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe15g00516 443 PRINTS E-class P450 group IV signature 335 349 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe15g00516 443 PRINTS E-class P450 group IV signature 298 314 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe15g00516 443 Gene3D Cytochrome P450 11 443 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe15g00516 443 PANTHER HYDROPEROXIDE LYASE 14 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00516 K01723 AOS; hydroperoxide dehydratase [EC:4.2.1.92] - csv:101211574 728.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00179 Cpe-Chr11:971686 Cpe15g00516 Cpe-Chr15:6083290 9.91E-162 dispersed
Cpe15g00516 Cpe-Chr15:6083290 Cpe15g00734 Cpe-Chr15:7694460 1.90E-121 dispersed
Cpe15g00516 Cpe-Chr15:6083290 Cpe04g00255 Cpe-Chr4:3146114 0 wgd
Cpe15g00516 Cpe-Chr15:6083290 Cpe07g00449 Cpe-Chr7:2875127 3.28E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g531 . . . . . . . . Cmo19g00654 Cmo11g01328 . . . . Sed10g2071 . Cpe15g00516 Bhi05g01174 Tan02g0854 Cmetu01g2737 . Hepe02g0549 . . . . . . . . . . . . . . Csa07g00818 . Cme01g00009 . . . . . . . . . . . Cma11g01781 Cma19g00641 . Car19g00487 . . . . . . . . . . . . . . . . Lsi11g01051 . Chy01g00010 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003219 0 2 0 0 0 2 2 2 2 2 1 2 2 2 2 2 2 3 2 2 2 1 2 2 2 2 2 2 1 3 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00516 Cpe_Chr15 FPKM 4.315628 5.714972 1.456083 0.908882 2.235734 2.491114 2.49915 0.288318 0.455322 0.612503