Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00520 ATGGAGTTGGGGATAGATGAAAATCCAAATGGGTGCTTACAGTTCTTCCCGGACCAGCAATGGAACCTTCTTTGGGACCCATCATATCCACACGCTGTGGACTTATATGATTTGAGCATTTCAAAATTCTCTTCAATGGAGGGTACCTGCAGTTCTCTGCGGTCACCGGCTTTAACCATAGCGCCCTCCTCTTTGTCTAGAAGTGGGTTCTCAGAGAAGCCATTGTTGCCTGCTCGAGCTGTGAAATTATCGAAGAACAAGAGATACCCACTTGCTCGAACCCTCAAATTTCTTCCCATTACAGCTCAAGCTTCGAGCACGAGTAGTTTTAGCTCAGAGGCAGCTCCGGAAATTTCAAAGAAGGAAGTTTCAAAAGATGAGGATCTTGTATTTGTTGCTGGTGCTACAGGAAAAAGTGTTAAAAAGCTTAAGCTTGATGAAGCTGTAGAAAAGCTTGAAACTGTGATATGTGACTTGGAGAAACCAAATCAGATTGGACCTGCAATCGGGAATGCGTCGATAGTTATTTGCTGCATTGGTGCAAGTGAGAAGGAGATTTTCGATATCTCTGGACCTTATCGAATCGACTATATGGCTACCAAAAACTTGGTTGAAGCAGCAACCGTTGCAAAAGTGAAGCATTTCGTTCTGCTTACGTCCCTCGGAACCAACAAGATTGGATTTCCTGCTGCCATTCTCAACTTGTTTTGGGGAGTCCTGTTATGGAAAAGGAAGGCAGAAGAAGCATTGATTGCAAGTGGTCTTCCTTATACAATAGTGAGACCTGGGGGCATGGAGAGGCCTACAGATACTTTCAAGGAAACTCATAACACTACTGTTTCACCTGAAGATACTTTGTTTGGTGGTCTGGTGTCGAATCTTCAGGTTGCAGAGCTCATGGCAGGCATAGCAAAAAATCCTGGTCTCTCATGCTATAAAGTGATTGAAGTAATTGCCGAGACAACTGCACCATTGACTCCCCTAGAGGATCTTCTTACAAAAATACCATCTAAAAAGGAATATGGCGCTGCACGCATTGTCGATCCACCACCTCCTAAGAGCGTTTCATCAGAACCGTCGAGCATTGCCAAAGAAAAGGAATCAGCTGAAGCAAAGCCACCCGCTCAAAGGGTTTCATCAGAACAGTTGAATATTGCAAAAGAGAAGGAATCAGCTGTAGCAAATGTTACAAAACAGTCATCATCACCCTACATTTCGTACGAGGATTTAAAACCTCCAACATCACCTACTCCATCTGCACCTGTTGGGAAAATAGATTTAAATGTCGTCGACGGAGTCTCATCGATCGCTCAAACGAGTTCATCAGAATCGTCAACTGAAATTGCCGAGGCGAATCCTGCACCTGCTCCTGAAAAAGCAGTGACAATGAAACCTCTCTCCCCTTATGTAGCATATGAAGATCTAAAGCCTCCTACATCACCATCTCCTAGTGCACCTTCCCTATCATTTTCATCAACATCTCCCTCAAACGGTCCACCTCAGCCTGCTACCGCGAACGTAAACAGCTCAACGCCAATTCCAGAGGCAGACGACTCGAGTGAAACACATCTTCCCAAGCCAAAGAAGCTACAACCACTGTCACCTTTCACCATAACATTCGTTACTTTTTCCCGTCCAGATTCCATGGACGACTACACTGAATATGGCGCTGCACGCATTGTCGATCCACCACCTCCTAAGAGCGTTTCATCAGAACCGTCGAGCATTGCCAAAGAAAAGGAATCAGCTGAAGCAAAGCCACCCGCTCAAAGGGTTTCATCAGAACAGTTGAATATTGCAAAAGAGAAGGAATCAGCTGTAGCAAATGTTACAAAACAGTCATCATCACCCTACATTTCGTACGAGGATTTAAAACCTCCAACATCACCTACTCCATCTGCACCTGTTGGGAAAATAGATTTAAATGTCGTCGACGGAGTCTCATCGATCGCTCAAACGAGTTCATCAGAATCGTCAACTGAAATTGCCGAGGCGAATCCTGCACCTGCTCCTGAAAAAGCAGTGACAATGAAACCTCTCTCCCCTTATGTAGCATATGAAGATCTAAAGCCTCCTACATCACCATCTCCTAGTGCACCTTCCCTATCATTTTCATCAACATCTCCCTCAAACGGTCCACCTCAGCCTGCTACCGCGAACGTAAACAGCTCAACGCCAATTCCAGAGGCAGACGACTCGAGTGAAACACATCTTCCCAAGCCAAAGAAGCTACAACCACTGTCACCTTTCACC 2253 45.23 MELGIDENPNGCLQFFPDQQWNLLWDPSYPHAVDLYDLSISKFSSMEGTCSSLRSPALTIAPSSLSRSGFSEKPLLPARAVKLSKNKRYPLARTLKFLPITAQASSTSSFSSEAAPEISKKEVSKDEDLVFVAGATGKSVKKLKLDEAVEKLETVICDLEKPNQIGPAIGNASIVICCIGASEKEIFDISGPYRIDYMATKNLVEAATVAKVKHFVLLTSLGTNKIGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGGMERPTDTFKETHNTTVSPEDTLFGGLVSNLQVAELMAGIAKNPGLSCYKVIEVIAETTAPLTPLEDLLTKIPSKKEYGAARIVDPPPPKSVSSEPSSIAKEKESAEAKPPAQRVSSEQLNIAKEKESAVANVTKQSSSPYISYEDLKPPTSPTPSAPVGKIDLNVVDGVSSIAQTSSSESSTEIAEANPAPAPEKAVTMKPLSPYVAYEDLKPPTSPSPSAPSLSFSSTSPSNGPPQPATANVNSSTPIPEADDSSETHLPKPKKLQPLSPFTITFVTFSRPDSMDDYTEYGAARIVDPPPPKSVSSEPSSIAKEKESAEAKPPAQRVSSEQLNIAKEKESAVANVTKQSSSPYISYEDLKPPTSPTPSAPVGKIDLNVVDGVSSIAQTSSSESSTEIAEANPAPAPEKAVTMKPLSPYVAYEDLKPPTSPSPSAPSLSFSSTSPSNGPPQPATANVNSSTPIPEADDSSETHLPKPKKLQPLSPFT 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6117007 6130093 - Cp4.1LG15g05260.1 Cpe15g00520 481978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00520 751 CDD SDR_a5 130 321 - -
Cpe15g00520 751 MobiDBLite consensus disorder prediction 432 449 - -
Cpe15g00520 751 Pfam NAD(P)H-binding 142 307 IPR016040 -
Cpe15g00520 751 MobiDBLite consensus disorder prediction 554 751 - -
Cpe15g00520 751 MobiDBLite consensus disorder prediction 646 663 - -
Cpe15g00520 751 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 138 530 IPR044719 -
Cpe15g00520 751 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 51 138 IPR044719 -
Cpe15g00520 751 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 573 743 IPR044719 -
Cpe15g00520 751 MobiDBLite consensus disorder prediction 404 531 - -
Cpe15g00520 751 MobiDBLite consensus disorder prediction 607 622 - -
Cpe15g00520 751 MobiDBLite consensus disorder prediction 343 381 - -
Cpe15g00520 751 MobiDBLite consensus disorder prediction 699 731 - -
Cpe15g00520 751 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 130 318 IPR036291 -
Cpe15g00520 751 Gene3D - 124 338 - -
Cpe15g00520 751 MobiDBLite consensus disorder prediction 485 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00520 - - - cmo:103495191 681.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00941 Cpe-Chr5:6163518 Cpe15g00520 Cpe-Chr15:6117007 8.67E-09 dispersed
Cpe10g00097 Cpe-Chr10:655919 Cpe15g00520 Cpe-Chr15:6117007 1.96E-18 dispersed
Cpe10g00892 Cpe-Chr10:5023396 Cpe15g00520 Cpe-Chr15:6117007 2.16E-13 dispersed
Cpe15g00520 Cpe-Chr15:6117007 Cpe19g00345 Cpe-Chr19:3023022 3.91E-08 dispersed
Cpe15g00520 Cpe-Chr15:6117007 Cpe19g01129 Cpe-Chr19:7595726 8.38E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g547 . . . . . . . . Cmo19g00657 . . . . . . . Cpe15g00520 . . . . . . . . . . . . . . . Cone8ag1176 . . . Csa07g00822 . . . . . Bda14g00535 . . Bma03g00535 . . . . . . . Car19g00490 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00520 Cpe_Chr15 FPKM 3.399683 4.199944 2.800451 3.557313 4.400325 2.701793 3.492855 5.505451 4.955335 5.498935