Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00525 ATGTTGTCTGGTTATGTTAGCTCTGATGGGTATGAGGCTCAAGCACTTGGGCTTTTTGTGGAAATGCAAACAGCCCCTGATATGATTAGAATTGATGAGTTTAGTCTTACAATCATGCTTAATTTAACTGCTAAGTTATGTGTGCTGTCTTATGGTAAACAGTTACATACCTTCATGTTGAAGACTGCTAACGATTTAAGCGTTTTTGCTGCTAGTTCCTTAATTGATATGTACTCTAAGTGTGGATGTTTTAAAGAAGCTTGTAGAGTTTATGATGGATGTGGTGAGGTTATTGATTTGGTCTCTAGAAATGCCATGGTAGCAGCTTGTTGTAGAGCAGGGGAGATAGATTTGGCTGTGGATCTTTTCTCGAGGGAACGGGATCGAAATGATGTTGTAGCATGGAACACGATGGTATCGGGTTTTGTTCAGAACGGTTACGACAAAGAGTCATTAAAGTTATTCGTTAATATGGCAGATGAAAATGTTAGGTGGAATGAACACACTTTTGCAAGTGTCTTGAGTGCTTGCTCCAATCTAAAGAGCTTGAAGCTTGGAAAGGAAATCCATGCTTATGTTTTGAAGAATGGGCTGATTGTTAATCCCTTCATTGGCAGTGGCCTTGTTGATGTTTACTGCAAGTGCAATAACATGAGGTATGCCGAGTCGGTTCATTCAGAATTGACAACGCGAAATGTATACTCGATCACTTCAATGATTGTTGGCTATTCTTCTCAAGGTAACATGGTAGAAGCCAGAAAGCTTTTTGATTCCTTGGATGAAAAGAATTCTGTCGTGTGGACTGCTTTATTTACTGAATATGTCAAATCACAGCAATTTGAAGCAGTTTTTGAACTTTTAAGTGAATATAGGAAGGAGGCAGCTGTTCCTGATGTGCTGATTCTTGTTAGTTCATAG 918 39.11 MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFMLKTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAVDLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNLKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYRKEAAVPDVLILVSS 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6156331 6158225 - Cp4.1LG15g05270.1 Cpe15g00525 481983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00525 305 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Cpe15g00525 305 Gene3D Tetratricopeptide repeat domain 147 303 IPR011990 GO:0005515
Cpe15g00525 305 Gene3D Tetratricopeptide repeat domain 1 146 IPR011990 GO:0005515
Cpe15g00525 305 TIGRFAM PPR: pentatricopeptide repeat domain 104 124 IPR002885 -
Cpe15g00525 305 TIGRFAM PPR: pentatricopeptide repeat domain 133 166 IPR002885 -
Cpe15g00525 305 TIGRFAM PPR: pentatricopeptide repeat domain 234 263 IPR002885 -
Cpe15g00525 305 Pfam PPR repeat 208 232 IPR002885 -
Cpe15g00525 305 Pfam PPR repeat 72 92 IPR002885 -
Cpe15g00525 305 Pfam PPR repeat 101 124 IPR002885 -
Cpe15g00525 305 Pfam PPR repeat 237 263 IPR002885 -
Cpe15g00525 305 Pfam PPR repeat family 131 178 IPR002885 -
Cpe15g00525 305 PANTHER - 243 303 - -
Cpe15g00525 305 PANTHER - 99 257 - -
Cpe15g00525 305 PANTHER - 1 124 - -
Cpe15g00525 305 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Cpe15g00525 305 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 129 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00525 - - - cpep:111776408 604.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00525 Cpe-Chr15:6156331 Cpe09g00246 Cpe-Chr9:1415813 1.94E-08 dispersed
Cpe15g00525 Cpe-Chr15:6156331 Cpe12g00229 Cpe-Chr12:1521226 2.06E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g510 . . Bda06g00949 . . . . Bma12g00550 . . . . . . . . Cpe15g00525 . . . . . . . . . . . . . . . . . . . . . Cme01g01480 . . . . . . . . . . . . . . Car19g00495 . . . . . . . . . . . . . . . . . . Chy01g00828 .
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013461 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00525 Cpe_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0