Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00532 ATGGAGGACAAGCGCCGCGACGCCGGAAATTTACCGGCAAACAGCACCGATTCTCCGTCATCGGAGCCGCCTTCTTCTCGTCGTCGAGCTGGAGCTCAGAAGCGAAAGGCAAGTACTCTCGGTGGCTCTATCTCCTCATCCGCGCCCTCGAAACGCGTTACTCGCGAAAAATCTGCGCTTTCACATCCTCCAAATCATAACGGCCCTTTCACCAGAGCTCGATTTGGCCCTAACAATGTTGCTGGAGCAGCATCGGCTAATGGAGGTTTTGCCTCCGCCGCCGGATCAGTTAAGACGGAAGGCTCTTTACTTCATTCTGAAGTTCAGCGTGGAGACGCGTTGGTCGCTGCGGCGGAGGAATTGAACAAGGCGACTAGATTGGCGAATTTGGAGGCGTCTTTCGAAGCTGATTTCGAAGCCATTAAATCTCGGAGTGCGAATTCTCATGTAGTTCCGAATCATTGCGGTTGGTTTTCATGGACAGAAGTCCATCCAATTGAGGAACGTTCGATGCCTTCTTTTTTCAGTGGAAAGGATGGCACTCGAAGTCCTGATATATATATCAAGATACGTAATTGGATTATGAAAAAATTCCATGCAAATCCCAGTACGCAGCTTGAAGCAAAAGATCTATCAGAGCTGGAAGTTGGAGAGCTAGATGCTAGAAAGGAGGTGATGGAGTTTCTTGACCATTGGGGTTTGATTAATTTTCACCCTTTCCTATCTGCAGAATCAATTTCAACAAGTGATCTTGACGATGAAAGTCAAAAGGACTCTTTGGTTGAGAAGTTGTTTCACTTTGAAACATTAGAATCCTGCCCATCTATTGTTCCGAAGATCAATGTTACCACTGCAGCTCCACCTAGATTGCTTAGAGAATCTGCAATTTCTGAAGAGATGACGAGGCCTGAGGGTCCATCTGTTGAGTACCACTGTAACTCATGCTCTGCTGATTGCTCTCGGAAACGTTACCACTGCCAGAAGCAGGCAGATTTTGATTTATGTTCGGAGTGCTTTAACAATGGGAAATTTGATTCCGATATGTCTTCATCAGATTTTATTCTCATGGAGTCTGTCGGGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCTGAACATGTGGCTACCAAAACAAAAGCCCAATGTATATTGCACTTTATTCAAATGCCAATTGAGGATACCTTTCTTGAATCTGAGGATAATGTTGAAGACGGTGCAAAAGAAACTGTTCCACCTTTAACTGAAAATGATTCATCAGTTCCTACTGATATCACTGAATCAATGGATAATAAGGCTACTGAAAAAGAGGCTTCGAATACAGAAACTGGAACCAAGGAAGATACAGGTGAGGTAAAAGTTGGGATGGATAATTCAAAATCAGAGGATGTTGAAGGAAAAGCTGCTTTAGATAACTCCAAATTAGAAGATGGTGATCAGAAGGTTTCTGAAGACATTGCCTTGAATGCTTTGAGGGAGGCATTTGAAGCCATTGGTTACGTATTAACACCTGAGCACCCACTATCATTTGCTGATGTAGGGAACCCTGTCATGGCATTGGCATCTTATTTCTTGTTAGCCTATAAGATGCACCAGGTCTGCGCTGCAAAGGAGCAGTTTGACGTTCACTTTGCTGCATTCCTTGCACGCTTAGTTGGATCAGATGTTGCCAGTGCATCGGCCCGTTTTTCTTTGAAAAGCGTTTCTCAGAAATCTCCCAGTTTAGAACTGGCTACAAGGCACTGCTTTATTTTAGAAGATCCACCAGATGATCAGAAGGCCAAAGCTAATTCAGAGAGTATTGTCAATGTGGAAGCTCAGAAAAATGACAAGGAACAGTGTGTGAAACAGAGACCAGACAATTCTACTTCGGTCCTCGATGACGGAGCCCTATCAACTAATGACAGTAATAACAAAAATGGAGAATCGGTGACAAAGGAAACTATGGATAATGAAAAGTCTTCAGATGCTATTATAGAACACAATCCAATTACTAATCATGATTCAGATAGAGCAAGTAATTTGAAAGAATCGAGAGAACCAGAATTACCTGAGGTTGAAAGAACAGGCATTGTGAAGGAATCTGAAAATGTAGAATCAAAATCGACATCAAATCCAGTTGAAAAGTTGGGAGAAGGAACTTCTGCTGAAAAACCATCACAACCGAAGTTGTCACCAAAGGATGTTCATATGTCAGATTTGCAACATGCTGAAAAAACTGAGATTCAGAAGCAAGTTCCATCTCATTCTGCCAAAACTAAAAAAGAATTAGATGACGAGCCAAATCATTTACCCTCTGCAAGCGAGCCTCAACCAACAATTTCTGCTAATTCAGTGAAAGAAGCCTCAAAAGATGTAGCTATTATACCTGATTCTCACAATGAGAATGAACCTGCACAAACTGAAATGTCTAAATCCGTGGTTGACCAGGGATCAAGCAAGGTCGCTGACGCTGATTCTTTGCCCTCAACAGAGAATGCAACCCCACTACCAGTAAAACCAACTTCGGTTATTGAAAGAGGAGCAGATGTTAATCAAAGCAAGGACAACAAAGAAGAAAACTCCAATTGTACGAGTAAAAAGGAGGATAAAATCGATAAGTTGAAGCGTGCTGCGGTTACGACACTGTCAGCAGCAGCAGTGAAGGCACAAATTCTGGCTAATCAAGAAGAGGACCAAATCCGTCAACTTTCCATGATATTAATCGAAAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATTCTTCAACGACATGGAAAACGTGACGGTGAGAATGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAGGAACGTGCACAGATAATCGCTGCTCGACTAGGCTTACCTGCTTCATCATCACGAGGTGGGGCACCAACATTACCAACAAACAGGATGCCCATGAACTTTGCAAACACAGTCCCAAGGCCTCCAATGGGCATGGTGCCCCAAAGGCCTCCGATGTCGGGACTGCCGGGTATGCCTGCTTCTAACCCTAACCCCCAATACCCAACAACCAGTACAACAATTTCTGGGAGTTCATTTCGCCCTGCAAATCAGGACACACTTTCTTCTGTTGGGTCAAAGTAA 3156 43.73 MEDKRRDAGNLPANSTDSPSSEPPSSRRRAGAQKRKASTLGGSISSSAPSKRVTREKSALSHPPNHNGPFTRARFGPNNVAGAASANGGFASAAGSVKTEGSLLHSEVQRGDALVAAAEELNKATRLANLEASFEADFEAIKSRSANSHVVPNHCGWFSWTEVHPIEERSMPSFFSGKDGTRSPDIYIKIRNWIMKKFHANPSTQLEAKDLSELEVGELDARKEVMEFLDHWGLINFHPFLSAESISTSDLDDESQKDSLVEKLFHFETLESCPSIVPKINVTTAAPPRLLRESAISEEMTRPEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESVGVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDTFLESEDNVEDGAKETVPPLTENDSSVPTDITESMDNKATEKEASNTETGTKEDTGEVKVGMDNSKSEDVEGKAALDNSKLEDGDQKVSEDIALNALREAFEAIGYVLTPEHPLSFADVGNPVMALASYFLLAYKMHQVCAAKEQFDVHFAAFLARLVGSDVASASARFSLKSVSQKSPSLELATRHCFILEDPPDDQKAKANSESIVNVEAQKNDKEQCVKQRPDNSTSVLDDGALSTNDSNNKNGESVTKETMDNEKSSDAIIEHNPITNHDSDRASNLKESREPELPEVERTGIVKESENVESKSTSNPVEKLGEGTSAEKPSQPKLSPKDVHMSDLQHAEKTEIQKQVPSHSAKTKKELDDEPNHLPSASEPQPTISANSVKEASKDVAIIPDSHNENEPAQTEMSKSVVDQGSSKVADADSLPSTENATPLPVKPTSVIERGADVNQSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAQILANQEEDQIRQLSMILIEKQLHKLESKLAFFNDMENVTVRMREQLDRSKQRLFQERAQIIAARLGLPASSSRGGAPTLPTNRMPMNFANTVPRPPMGMVPQRPPMSGLPGMPASNPNPQYPTTSTTISGSSFRPANQDTLSSVGSK 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6214774 6223469 + Cp4.1LG15g05290.1 Cpe15g00532 481990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00532 1051 Gene3D - 301 353 IPR043145 -
Cpe15g00532 1051 Gene3D - 364 415 - -
Cpe15g00532 1051 SMART zz_5 306 350 IPR000433 GO:0008270
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 716 730 - -
Cpe15g00532 1051 SUPERFAMILY Homeodomain-like 156 238 IPR009057 -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 38 65 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 1022 1051 - -
Cpe15g00532 1051 Pfam Zinc finger, ZZ type 309 344 IPR000433 GO:0008270
Cpe15g00532 1051 PANTHER SWI/SNF COMPLEX-RELATED 44 544 - -
Cpe15g00532 1051 ProSitePatterns Zinc finger ZZ-type signature. 312 338 IPR000433 GO:0008270
Cpe15g00532 1051 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 367 415 IPR017930 -
Cpe15g00532 1051 Pfam SWIRM-associated region 1 894 971 IPR032451 -
Cpe15g00532 1051 SUPERFAMILY RING/U-box 308 356 - -
Cpe15g00532 1051 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 44 544 - -
Cpe15g00532 1051 ProSiteProfiles Zinc finger ZZ-type profile. 307 361 IPR000433 GO:0008270
Cpe15g00532 1051 PANTHER SWI/SNF COMPLEX-RELATED 564 1008 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 864 884 - -
Cpe15g00532 1051 Gene3D - 155 239 IPR036388 -
Cpe15g00532 1051 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 564 1008 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 1 76 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 814 851 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 749 783 - -
Cpe15g00532 1051 CDD SANT 385 410 IPR001005 -
Cpe15g00532 1051 ProSiteProfiles SANT domain profile. 364 415 IPR017884 -
Cpe15g00532 1051 CDD ZZ_RSC8 310 354 IPR041984 -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 11 27 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 1001 1021 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 449 487 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 623 884 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 421 487 - -
Cpe15g00532 1051 ProSiteProfiles Myb-like domain profile. 361 411 IPR001005 -
Cpe15g00532 1051 SUPERFAMILY Homeodomain-like 364 424 IPR009057 -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 997 1051 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 638 664 - -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 433 448 - -
Cpe15g00532 1051 Pfam SWIRM domain 152 237 IPR007526 GO:0005515
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 665 715 - -
Cpe15g00532 1051 ProSiteProfiles SWIRM domain profile. 149 246 IPR007526 GO:0005515
Cpe15g00532 1051 SMART sant 365 413 IPR001005 -
Cpe15g00532 1051 Pfam Myb-like DNA-binding domain 367 409 IPR001005 -
Cpe15g00532 1051 MobiDBLite consensus disorder prediction 786 800 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00532 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101218015 1604.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00561 Cpe-Chr2:3355557 Cpe15g00532 Cpe-Chr15:6214774 1.25E-12 dispersed
Cpe06g00612 Cpe-Chr6:3776713 Cpe15g00532 Cpe-Chr15:6214774 3.14E-12 dispersed
Cpe15g00532 Cpe-Chr15:6214774 Cpe17g00231 Cpe-Chr17:1492490 3.47E-35 dispersed
Cpe09g00641 Cpe-Chr9:4842957 Cpe15g00532 Cpe-Chr15:6214774 6.36E-12 transposed
Cpe15g00532 Cpe-Chr15:6214774 Cpe04g00127 Cpe-Chr4:1136951 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00532 Cpe_Chr15 FPKM 1.428083 1.426343 0.100127 0.127985 4.531881 4.194183 4.722481 0.0 0.046895 0.0