Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00533 ATGCCTTCCCGAAGAAGGACCCTCTTGAAGGTCATCATCCTTGGGGATAGCGGGGTTGGGAAGACCTCTTTGATGAACCAATATGTAAATAAGAAGTTTAGTAATCAATACAAGGCCACCATTGGAGCTGATTTTTTGACTAAAGAGGTGCAATTCGAAGATAGACTTTTCACTTTGCAGATATGGGATACAGCAGGCCAGGAACGATTCCAAAGTCTTGGTGTTGCTTTTTACAGAGGTGCTGATTGCTGCGTTCTGGTGTATGATGTCAATTCAATGAAATCATTTGACAACCTTAACAACTGGCGGGAAGAATTCCTTATCCAGGCGAGCCCTTCCGATCCCGAAAATTTTCCCTTCGTTGTTCTAGGAAATAAAGTTGACATAGATGGTGGAAACAGTAGAGTTGTTTCGGAGAAAAAGGCACGAGCTTGGTGTGCATCGAAAGGAAACATCCCATACTTTGAAACTTCTGCCAAAGAAGGCATTAATGTGGAAGAAGCCTTCGAATGCATTGCAAAAAATGCCCTCAAGAGTGGGGAAGAGGAAGAGATATACTTACCCGACACCATCGATGTTGCGAGGAACAATCAGCCAAGATCATCTGGATGCGACTGCTGA 621 43.8 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFECIAKNALKSGEEEEIYLPDTIDVARNNQPRSSGCDC 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6222067 6226394 - Cp4.1LG15g05350.1 Cpe15g00533 481991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00533 206 SMART rab_sub_5 9 179 - -
Cpe15g00533 206 CDD Rab7 9 182 - -
Cpe15g00533 206 SMART ras_sub_4 6 179 - -
Cpe15g00533 206 Pfam Ras family 10 177 IPR001806 GO:0003924|GO:0005525
Cpe15g00533 206 ProSiteProfiles small GTPase Ras family profile. 3 206 IPR001806 GO:0003924|GO:0005525
Cpe15g00533 206 SMART ran_sub_2 14 206 - -
Cpe15g00533 206 SMART rho_sub_3 11 179 IPR001806 GO:0003924|GO:0005525
Cpe15g00533 206 ProSiteProfiles small GTPase Rab1 family profile. 3 206 - -
Cpe15g00533 206 ProSiteProfiles small GTPase Rho family profile. 2 180 - -
Cpe15g00533 206 PANTHER RAB FAMILY 1 206 - -
Cpe15g00533 206 PRINTS Transforming protein P21 ras signature 9 30 - -
Cpe15g00533 206 PRINTS Transforming protein P21 ras signature 32 48 - -
Cpe15g00533 206 PRINTS Transforming protein P21 ras signature 50 72 - -
Cpe15g00533 206 PRINTS Transforming protein P21 ras signature 116 129 - -
Cpe15g00533 206 PRINTS Transforming protein P21 ras signature 154 176 - -
Cpe15g00533 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 183 IPR027417 -
Cpe15g00533 206 Gene3D - 2 189 IPR027417 -
Cpe15g00533 206 PANTHER RAS-RELATED PROTEIN RABG3F 1 206 - -
Cpe15g00533 206 TIGRFAM small_GTP: small GTP-binding protein domain 9 172 IPR005225 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00533 K07897 RAB7A; Ras-related protein Rab-7A - csv:101218255 416.001
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00429 Cpe15g00533 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00128 Cpe-Chr4:1141946 Cpe15g00533 Cpe-Chr15:6222067 5.59E-66 dispersed
Cpe05g01090 Cpe-Chr5:7224589 Cpe15g00533 Cpe-Chr15:6222067 3.00E-16 dispersed
Cpe15g00533 Cpe-Chr15:6222067 Cpe16g00052 Cpe-Chr16:683899 1.26E-52 dispersed
Cpe16g00049 Cpe-Chr16:637152 Cpe15g00533 Cpe-Chr15:6222067 2.99E-06 dispersed
Cpe17g00557 Cpe-Chr17:4591131 Cpe15g00533 Cpe-Chr15:6222067 5.79E-139 transposed
Cpe15g00533 Cpe-Chr15:6222067 Cpe04g00126 Cpe-Chr4:1136910 2.17E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001330 4 2 4 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 2 2 2 3 2 1 2 1 2 4 3 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00533 Cpe_Chr15 FPKM 7.800788 8.651742 12.214303 12.521978 13.892785 11.733894 12.008149 23.567839 23.888514 26.771868