Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00535 ATGTCTGTTTCCGAGCTTAAGGAGCGGCATGTGGCGGCTATTGAGACGGTCAACTCTCTCAAAGAGCGATTGAAGCAGAAGAGGCATTCGTTGCTCGACACTGATGGTGAGCTACTTCATCATTCTGGAGTAGCTGGGTATGTGAGGTCTCTGGGGAAGAATCCCGTCTGTTTTGGAGCTACGGATCTCGTGTGCTGCAGGACTTTACAGGGTCACACTGGAAAGGTGTATTCGTTGGATTGGACTTCAGAGAGGAATCGAATCGTTAGTGCATCTCAAGATGGGCGTTTAATAGTGTGGAATGCGCTAACGAGCCAGAAGACTCATGCCATAAAACTACCTTGCCCTTGGGTCATGACCTGTGCTTTCTCTCCTTCTGGTCAATCTGTAGCGGGTGGTGGTCTTGACAGTGTTTGTTCTATCTTCAACCTCAACTCTCCAACTGACAGAGATGGGAATCTGCAAGTGTCTAGAACGCTTAGCGGGCATAAAGGATACATTTCGTCATGTCAGTATGTTCCAGATGAGGATACTCACCTCATTACTGGTTCTGGGGATCAGACGTGTGTCTTATGGGATATTACTACTGGGCTTCGAACCTCTGTTTTTGGAGGTGAATTTCAGTCAGGGCATGCAGCAGATGTATTGAGTGTATCTATTAGTGGATCCAATTCCAGAACATTTATTTCTGGTTCTTGTGATGCAACTGCTCGCCTGTGGGACACTCGGGTAGCTAGTCGAGCAGTGCAGACATTTCATGGGCATGAAGGGGATGTTAATGCAGTGAAGTTCTTTTCAGATGGTAACCGATTTGGGACAGGTTCTGATGATGGAACTTGCAGATTATTTGATATCAGAACTGGGCATGAACTCCAAGTTTACCATCAGCTGCACAGTGATAATACCAACTCACACGTAACCTCCATTGCATTCTCTATATCTGGAAGACTTTTGTTTGCTGGATACAAAAATGGTGATTGCTATGTGTGGGACACCTTACTTGCAAAGATGGTTCTGAACTTGGGAACACTTCAGAACTCACACGAAGGGCGAATTAGTTGCTTGGGCTTGTCTGCTGATGGAAGTGCTTTATGTACAGGAAGTTGGGATTCAAACCTGAAGATATGGGCTTTCGGAGGTCACCGGAAGGTAACTTAA 1158 46.03 MSVSELKERHVAAIETVNSLKERLKQKRHSLLDTDGELLHHSGVAGYVRSLGKNPVCFGATDLVCCRTLQGHTGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCPWVMTCAFSPSGQSVAGGGLDSVCSIFNLNSPTDRDGNLQVSRTLSGHKGYISSCQYVPDEDTHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHAADVLSVSISGSNSRTFISGSCDATARLWDTRVASRAVQTFHGHEGDVNAVKFFSDGNRFGTGSDDGTCRLFDIRTGHELQVYHQLHSDNTNSHVTSIAFSISGRLLFAGYKNGDCYVWDTLLAKMVLNLGTLQNSHEGRISCLGLSADGSALCTGSWDSNLKIWAFGGHRKVT 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6235703 6239911 - Cp4.1LG15g05390.1 Cpe15g00535 481993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00535 385 PRINTS Beta G protein (transducin) signature 107 122 IPR001632 -
Cpe15g00535 385 PRINTS Beta G protein (transducin) signature 125 142 IPR001632 -
Cpe15g00535 385 PRINTS Beta G protein (transducin) signature 88 102 IPR001632 -
Cpe15g00535 385 PRINTS Beta G protein (transducin) signature 69 85 IPR001632 -
Cpe15g00535 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 69 110 IPR001680 GO:0005515
Cpe15g00535 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 160 197 - -
Cpe15g00535 385 Pfam Anaphase-promoting complex subunit 4 WD40 domain 296 356 IPR024977 -
Cpe15g00535 385 ProSitePatterns Trp-Asp (WD) repeats signature. 180 194 IPR019775 -
Cpe15g00535 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 293 IPR001680 GO:0005515
Cpe15g00535 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 69 101 - -
Cpe15g00535 385 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 381 IPR016346 GO:0007165
Cpe15g00535 385 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 1 381 - -
Cpe15g00535 385 Gene3D - 15 377 IPR015943 GO:0005515
Cpe15g00535 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 345 385 - -
Cpe15g00535 385 CDD WD40 65 377 - -
Cpe15g00535 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 288 - -
Cpe15g00535 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 243 - -
Cpe15g00535 385 PIRSF GNBP_B 1 379 - -
Cpe15g00535 385 Coils Coil 3 23 - -
Cpe15g00535 385 SMART WD40_4 153 193 IPR001680 GO:0005515
Cpe15g00535 385 SMART WD40_4 200 241 IPR001680 GO:0005515
Cpe15g00535 385 SMART WD40_4 104 143 IPR001680 GO:0005515
Cpe15g00535 385 SMART WD40_4 337 377 IPR001680 GO:0005515
Cpe15g00535 385 SMART WD40_4 62 101 IPR001680 GO:0005515
Cpe15g00535 385 SMART WD40_4 245 284 IPR001680 GO:0005515
Cpe15g00535 385 SMART WD40_4 287 331 IPR001680 GO:0005515
Cpe15g00535 385 SUPERFAMILY WD40 repeat-like 62 376 IPR036322 GO:0005515
Cpe15g00535 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 250 IPR001680 GO:0005515
Cpe15g00535 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 202 IPR001680 GO:0005515
Cpe15g00535 385 Pfam WD domain, G-beta repeat 65 101 IPR001680 GO:0005515
Cpe15g00535 385 Pfam WD domain, G-beta repeat 209 241 IPR001680 GO:0005515
Cpe15g00535 385 Pfam WD domain, G-beta repeat 249 284 IPR001680 GO:0005515
Cpe15g00535 385 Pfam WD domain, G-beta repeat 155 193 IPR001680 GO:0005515
Cpe15g00535 385 PRINTS G protein beta WD-40 repeat signature 228 242 IPR020472 -
Cpe15g00535 385 PRINTS G protein beta WD-40 repeat signature 180 194 IPR020472 -
Cpe15g00535 385 PRINTS G protein beta WD-40 repeat signature 88 102 IPR020472 -
Cpe15g00535 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 376 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00535 K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 - csv:101218729 738.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00124 Cpe15g00535 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00535 Cpe-Chr15:6235703 Cpe10g00519 Cpe-Chr10:3042569 1.04E-09 dispersed
Cpe15g00535 Cpe-Chr15:6235703 Cpe04g00124 Cpe-Chr4:1121801 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g584 Blo02g00801 . . Bda08g00926 . . . . Cmo19g00675 . . . . . Sed05g2321 Cpe04g00124 Cpe15g00535 Bhi05g01225 Tan02g0806 Cmetu01g2025 . Hepe02g0513 . . Cla02g00527 Cam02g0545 Cec02g0546 Cco02g0552 Clacu02g0546 Cmu02g0541 Cre02g0872 Cone12ag1148 Cone8ag1196 . . . . . Cme01g01428 Blo04g00509 . . Bda14g00550 Bpe15g00870 . Bma03g00548 . . . . . Cma19g00661 . Car19g00504 . . . . . . . . . . . . . . . . Lsi11g01098 . Chy01g00793 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007608 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00535 Cpe_Chr15 FPKM 12.50356 12.919045 12.9687 13.837773 17.650576 14.59341 18.230379 13.762489 12.623737 12.672685