Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00541 ATGTTATCTTCTTCATCTCTATACTCCAACCCACATCCCCACCTCCGTCCTCTTCATTTCCGCCCTCCCAATCCTCTCTCCAATGTCGTCCTCCACCTCCCCTCCAACCAGAAACCCAACGCCACCGTCGCCTCCGCTGATCTCCGCCGCAACAATCCGACGGAAAAACCATCCACCAACGTCTCCGATCCTATCCAGCCGGAACCCCGCAAACACAACTCCAAATCCGCCGCCCTTGTCAACCAGTACCTATCATCCGGCGAATCGCCAAATCCACAAAACCTAGAACCCCCTTTGCCCGAAGAAGAGAAAGTGAAGCTTCTCGAACTCTCGCTTGTGAGAAAACGAACCCCTCAATTTCCTGGATCGATTTATGTTCAATCCCCGAGTGATTCCGATCAATTGCCTGAATTCGCTCATTTGTCGTTCAATCTTCGTGCCAAGACCGTCATTGAAGAATCAAATGTTGTACCTCTTATCAGGTGGTTGAAGCATAACTCATTGTCATATCCACAGATAGGGAAGCTCATATGCATGTCTAAGGGAAAGCTTGAATCGATTAGACGTCTTGTGGAATGGCTGAAGGGGATTCATGTAAAGGGAGGATATCTTGGACTTACACTCACTAAAGCTGGAGGGAATATATTGGAACGCAGCAATGATGAACTAGATGAAATTGTGAGCTACTTAGAGAGTAATGGAGTTAGAATGGTTTGGATTGGCTTTGTTATGAGTCGATGTCCTTATTTGCTGTCTTACAGTTTGGAAGAACTGAAAAGTCGTGTGGAGTTCTTCTTGAATATGGGTATGAATGAGAAAGACTTTGGTACAATGGTCTTTGATTTCCCTAAGGTGCTTGGTCAGTATACTCTTGAAGATATGAACCAAAAGGTCAACTATTTAAAGGAGTTCGGGCTTGAGATTGAGGATATAGGCAGATTACTGGCATACAAACCACAGTTGATGAATGGTAGCATTGAGGGTAAATGGAAGCCTCTTGTTAAGTACTTCTACTATCTTGGAATTTCCAAAGATGGTTTGAGGAGGATGCTTACAATAAAGCCAGTGGTTTTCTGCCTTGATCTGGAGACCATCATTGTGCCAAAGGTGCAATTCTTCAGAGACATAGGAGTTCGAGATGACGGGATTAGTAACATGCTTGTGAAGTTTCCATCATTATTGACATTCAGCCTGTACAAGAAAATCCGCCCTGTTGTCATATTCTTGATGACTAAAGCAGGAGTCAGGGAGAAAGACATTGGGAAAGTTATAGCTTTGGGACCGGAACTTTTTGGTTATAGCATAGTGCATAAGCTTGAGGTCAATCTAAAGTATTTTCTGTCACTCGGCATACATACCCGGACTCTAGGAGAAATGATTGCTGATTTTCCTATGCTGCTACGATATAATATCGACATTCTTCGACCAAAGTATCAATATTTGCGGAGAACCATGGTTCGCCCTCTGCAAGATATTATAGACTTTCCAAGGTTTTTCAGCTATTCTCTGGAGGGGCGCATCATTCCTAGGCATCAAGTTCTGGTTGAGAATTGTATAAATCTCAATCTGCGTTCCATGTTAGCTTGCACAGATGAAGAGTTTAAGAACAAGGTTGCAGATATAGTGGAAAAACGCCAAAGATTTGAATCCGGTAATGTGGATGGTTCTCTCACCATTGTCCATACGACTCACAACTCTATCGACTCGACTACACTAGATGACTCGTCGGGTGAAACTATAGAAGATTGA 1749 43.57 MLSSSSLYSNPHPHLRPLHFRPPNPLSNVVLHLPSNQKPNATVASADLRRNNPTEKPSTNVSDPIQPEPRKHNSKSAALVNQYLSSGESPNPQNLEPPLPEEEKVKLLELSLVRKRTPQFPGSIYVQSPSDSDQLPEFAHLSFNLRAKTVIEESNVVPLIRWLKHNSLSYPQIGKLICMSKGKLESIRRLVEWLKGIHVKGGYLGLTLTKAGGNILERSNDELDEIVSYLESNGVRMVWIGFVMSRCPYLLSYSLEELKSRVEFFLNMGMNEKDFGTMVFDFPKVLGQYTLEDMNQKVNYLKEFGLEIEDIGRLLAYKPQLMNGSIEGKWKPLVKYFYYLGISKDGLRRMLTIKPVVFCLDLETIIVPKVQFFRDIGVRDDGISNMLVKFPSLLTFSLYKKIRPVVIFLMTKAGVREKDIGKVIALGPELFGYSIVHKLEVNLKYFLSLGIHTRTLGEMIADFPMLLRYNIDILRPKYQYLRRTMVRPLQDIIDFPRFFSYSLEGRIIPRHQVLVENCINLNLRSMLACTDEEFKNKVADIVEKRQRFESGNVDGSLTIVHTTHNSIDSTTLDDSSGETIED 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6269462 6274694 - Cp4.1LG15g05500.1 Cpe15g00541 481999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00541 582 Pfam mTERF 227 535 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 Pfam mTERF 179 364 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 85 133 - -
Cpe15g00541 582 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 133 558 - -
Cpe15g00541 582 MobiDBLite consensus disorder prediction 1 21 - -
Cpe15g00541 582 MobiDBLite consensus disorder prediction 42 76 - -
Cpe15g00541 582 PANTHER CGI-12 PROTEIN-RELATED 85 133 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 Gene3D Transcription termination factor 3, mitochondrial 318 548 IPR038538 -
Cpe15g00541 582 SMART mt_12 348 379 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 SMART mt_12 421 452 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 SMART mt_12 312 343 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 SMART mt_12 489 520 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 SMART mt_12 457 487 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 SMART mt_12 241 271 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 SMART mt_12 384 416 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 PANTHER CGI-12 PROTEIN-RELATED 133 558 IPR003690 GO:0003690|GO:0006355
Cpe15g00541 582 MobiDBLite consensus disorder prediction 42 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00541 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101220316 810.061
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00541 Cpe-Chr15:6269462 Cpe15g00664 Cpe-Chr15:7279827 5.91E-18 dispersed
Cpe15g00541 Cpe-Chr15:6269462 Cpe03g00939 Cpe-Chr3:6893671 1.49E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g595 . . . . . . . . . . . . . . . . Cpe15g00541 Bhi05g01232 . . . . . . Cla02g00521 Cam02g0538 Cec02g0541 Cco02g0546 Clacu02g0539 Cmu02g0534 Cre02g0866 Cone12ag1152 . . . . . . Cme01g01421 Blo04g00511 . . Bda14g00552 Bpe15g00867 . Bma03g00551 . . . . . Cma19g00667 . Car19g00510 . . . . . . . . . . . . . . . . Lsi11g01104 . Chy01g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012281 1 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50618 PF02536 mTERF 5.70E-65 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00541 Cpe_Chr15 FPKM 6.254885 8.113615 11.548979 11.211272 18.240116 16.648767 19.222595 16.953945 16.9314 17.053745