Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00548 ATGGCTTCGAGCTCTTTAAAACAACAACGTCCCGAGGCGACATGGACGGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGATAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGGCAGTCGGCGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTCCGGCGGATCGAGTCGGGCCGTGTTCCTATTCCAAATTACAGAGGCGCCCACAATGGAGATGAAGAGTTGAGGTTAATTTTTTATATGGTTGGTGGATATTTGTGA 297 48.82 MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAHNGDEELRLIFYMVGGYL 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6321161 6321583 - Cp4.1LG15g05510.1 Cpe15g00548 482006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00548 98 ProSiteProfiles Myb-like domain profile. 7 61 IPR001005 -
Cpe15g00548 98 SMART sant 11 63 IPR001005 -
Cpe15g00548 98 PANTHER PROTEIN RADIALIS-LIKE 3 1 79 - -
Cpe15g00548 98 Gene3D - 7 74 - -
Cpe15g00548 98 CDD SANT 14 61 IPR001005 -
Cpe15g00548 98 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 79 IPR044636 GO:0003700
Cpe15g00548 98 SUPERFAMILY Homeodomain-like 14 69 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00548 - - - mcha:111007854 165.236
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00117 Cpe15g00548 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00117 Cpe-Chr4:1067393 Cpe15g00548 Cpe-Chr15:6321161 5.78E-53 dispersed
Cpe06g00112 Cpe-Chr6:550395 Cpe15g00548 Cpe-Chr15:6321161 1.11E-29 dispersed
Cpe07g00418 Cpe-Chr7:2704745 Cpe15g00548 Cpe-Chr15:6321161 3.60E-29 dispersed
Cpe11g00198 Cpe-Chr11:1077068 Cpe15g00548 Cpe-Chr15:6321161 6.71E-32 dispersed
Cpe15g00548 Cpe-Chr15:6321161 Cpe17g00918 Cpe-Chr17:7108289 2.95E-28 dispersed
Cpe15g00545 Cpe-Chr15:6300543 Cpe15g00548 Cpe-Chr15:6321161 1.32E-28 proximal
Cpe11g00206 Cpe-Chr11:1114914 Cpe15g00548 Cpe-Chr15:6321161 2.32E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g603 . . Bda06g00933 . . . . Bma12g00512 Cmo19g00684 . . . . . . Cpe04g00117 Cpe15g00548 Bhi05g01236 Tan02g0793 Cmetu01g1593 . Hepe02g0502 . . Cla02g00512 Cam02g0522 Cec02g0526 Cco02g0533 Clacu02g0524 Cmu02g0521 Cre02g0854 . . . . . . . Cme01g01408 . Blo13g00551 . . . . . . . . . . Cma19g00673 . Car19g00514 . . . . . . . . . . . . . . . . Lsi11g01111 . Chy01g00779 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000218 6 6 3 6 4 5 7 4 5 6 5 5 7 7 7 9 5 4 8 4 6 3 11 1 3 6 7 11 9 3 173
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50622 None None None None Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00548 Cpe_Chr15 FPKM 6.589784 8.398875 5.059969 4.867513 2.084101 2.436209 1.761035 3.136358 2.745982 2.512271