Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00549 ATGTGGATTTTTTGGCGTTTCATAACACAGAGGAACCCCGTTGGAGTTTGGAGCCGCAGAAAGATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCCGGGGACTGTCCTGATAATCTCAGTAGGGGTCGTTTGAAATTCCAGCAAGACCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCATGGGGTTTCCAGGGTTCATGAGTGGTGGCGGCGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCGGAAGAGAGAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACACCACCGCCGCCGCCCCCACCAACAACAACAAGAACAAGGCAAAATTTGAAATTAAATCAATGGAGGATTTGCAGGTGGACAAGAACAGCAAAGAGAAACGGATCAAAACAAGTTCAGAAGAAGAAGAGTTATCCAAAAACAACAACTCAAGCACCACAACAAACAACAACAGAGAAACATCAGCTGATACCTCAAAAGAAAACTCCAAAGCATCAGAGGTTCAAAAGCCTGGTTACATTCATGTCAGAGCAGGCCGTGGCCAAGCCACTGATAGCCACAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAATTATCGACTGTCAATCCAAGGTTGGAGTTCAATGTAGATGATCTCTTCACCAAAGAGGCGATCGGCGAAATGTCATCGGAGATGACAGATCCTTCTTCCTATTTACAATTCAATCCAAACAATCAACAAGTAGTTTCGTGTTCTGGATTAGAAATCGGAATCAATACCTCTGATATCGCACTTCGAAGATCATTCCCAGAAAATTTCGTGGATTCATCATGCCTCACCTTCAAATCGTTTCAAGTTCTTGATAATATCAATCAATCGATGCAGCAATTTCAAACCTCTTCGGGATGGGACATGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGCCGATCATCAAACGCCTTTTCATCTCATCCATATACAGGTACCATTGAAGGAGGCAATATAAAGATGGAAATGTGA 1359 45.62 MWIFWRFITQRNPVGVWSRRKMNRALPEMLQCLNTAGDCPDNLSRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVVPADHLMGFPGFMSGGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSRTSSCPPAVTPAVSAAGRESFKKRKAEKVHTTAAAPTNNNKNKAKFEIKSMEDLQVDKNSKEKRIKTSSEEEELSKNNNSSTTTNNNRETSADTSKENSKASEVQKPGYIHVRAGRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLSTVNPRLEFNVDDLFTKEAIGEMSSEMTDPSSYLQFNPNNQQVVSCSGLEIGINTSDIALRRSFPENFVDSSCLTFKSFQVLDNINQSMQQFQTSSGWDMDLQNLYNVGFDQGRSSNAFSSHPYTGTIEGGNIKMEM 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6338973 6342182 + Cp4.1LG15g05430.1 Cpe15g00549 482007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00549 452 MobiDBLite consensus disorder prediction 210 228 - -
Cpe15g00549 452 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 252 322 IPR036638 GO:0046983
Cpe15g00549 452 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 39 432 - -
Cpe15g00549 452 Pfam Helix-loop-helix DNA-binding domain 258 305 IPR011598 GO:0046983
Cpe15g00549 452 SMART finulus 260 310 IPR011598 GO:0046983
Cpe15g00549 452 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 304 IPR011598 GO:0046983
Cpe15g00549 452 MobiDBLite consensus disorder prediction 181 209 - -
Cpe15g00549 452 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 39 432 IPR024097 GO:0006355
Cpe15g00549 452 CDD bHLH_AtBPE_like 244 329 - -
Cpe15g00549 452 Gene3D - 251 326 IPR036638 GO:0046983
Cpe15g00549 452 Coils Coil 187 207 - -
Cpe15g00549 452 MobiDBLite consensus disorder prediction 135 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00549 Cpe-Chr15:6338973 Cpe13g00466 Cpe-Chr13:4893153 5.08E-49 dispersed
Cpe15g00549 Cpe-Chr15:6338973 Cpe16g00243 Cpe-Chr16:4493168 6.06E-41 wgd
Cpe15g00549 Cpe-Chr15:6338973 Cpe04g00116 Cpe-Chr4:1039875 2.98E-163 wgd
Cpe15g00549 Cpe-Chr15:6338973 Cpe05g01262 Cpe-Chr5:8818978 2.91E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50623 PF00010 HLH 1.30E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00549 - - cmo:103490373 567.385