Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00552 ATGGGGAAGAACAAGAGGTTTAAGGACGGTGGCGAGAAGGGAGCCGCCGCCGGCGATCACTGCCCTTCCAAGGTTTTCGTCAAGAACTTGCCGTACTCGTTCACCAACTCACAGCTTGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACGCAGAAGGGTTCAACTGAGCATCGTGGTTACGGATTCGTGCAGTTTGCTGTAGCAGAAGATGCGAATCAAGCAATTCAGCAGAAGAATGGGCTGTCTATTGAAGGACGCAAAATTACTGTTAAACATGCAATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCAAAAGAAAATCAAGGTACTGCATTCAAGTCAAAAACTAACAAGGAAGGAGATACTTCTGAAAGGGAAGAACAAACAACTAACGAGGATGGAGATACTTCTAAAAGGGAAGAACAAACAACTAACGAGGATGGAGATACTTCTGAAAAGGAAGAACAAACAACTAACGAGGATGGAGATGTTTCTAAAAGGGAAGAACAAACGACTTTAAATTCTGAGGGGAGGAAAGAGAGACATTTGAATGCTCAGAAATTGGCTCCACTTTCTAGTTATCTAGAGGATAAAGAGGGTTCTTCAGGAAAGCAAAGGATTGCAAGGACTGTTGTAGTCGGTGGTCTCCTTAATGCTGATATGGCTGAAGATGTTCACCGCCAAGCTAGAGAAGTTGGTGCTGTATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAGCATGGCCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTTCTTTTTGCTAGTGTTAAGTCTGCACGTGCTGCTGTGACCATATTACATCAGAAAGAGATGCAAGGAGGTGTTGTGTGGGCCCGCCAACTGGGTGGGGAGGGGTCCAAAACTCAGAAATGGAAACTTATTGTCAGAAATCTTCCATTTCAGGCCAAAGAGAAACAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGACGTGATGGTGCCACATAGTTCAGACACAGGATTATCGAAGGGTTTTGCGTTTGTCAAATTTACATGCAAGCAGGATGCTGAAAATGCTATTAAAAAGTTCAATGGTCAAAAATTTGGTAAAAGGACAATAGCTGTGGACTGGGCCATTCCGAAGAAGATATATAGTTCAGGTGCTAATGCTCCAGTTGATTCAGATGAAGGGGAAGAGACTGAAAAAGACAGAGAAGGTAGCATTAGTAGTGATGATTTGGAAGTTGAAAATGCTGCTGTTCATAACAAATCTCAGCGCTCCGACGAAGATGAAGGTTCTTCAGAGGACTCGGAGAAAGAAGATATTTCCTCGGAGATTGATTTTGAAGGAGAAGCAGAAATTTCAAGAAAAATACTTGAAAATCTAATTGCATCTTCGGCTAAAGAAGCTCTTCCTTCTCTCATTGATGGTAACCCACCATCTAAAGTGAACAAGGAGCCAGTTCTTGATTCATCAAAGAAGTCATCTGATATGTCTGATAAAGTATCAAATGGGCCCGAAAAGTTAAGTGAAGGCAAAACATCTATTCTTAAGCCAGTAGATGAAGAGGATTTGAAGAGAACAGTTTATATAGGCAATCTTCCATTTGATATTAATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTCGGTGAAGTACTATCCTTCGTACCCGTCCTTCATCAAGTTACAAAACGACCTAGAGGCACTGGTTTTCTCAAGTTTAAAACGGCTGATGCTGCTACTGCTGCTGTTTCATCTGCGAATGTTGCATCTGGTGTCGGAATATTTCTGAAAGGCAGGCAATTGAAAGTATTGAATGCTCTAGATAAGAAATCAGCTAATGAAAAGGAATTGGAGAAGTCAAAAAATGACAACGTTGACCACCGAAATCTTAACCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGTGTTTCTGCTAGTGATATGATGAAACGTCAAAGGCTAGAAAAGAAAAGAATGACTAAGCTTCAATCTCCGAATTTTCATGTTTCAAGAACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAGGAACTTCAAAAACTTTGCATCGAAGCTGTTACCTCGCGAGCTACAAAGCAAAAACCTGTGATTCGCCAGATTAAATTCTTGAAGGATGTGAAGAAAGGAAAGGTACTAACAAAAAACTACTCTTGTGGAGTTGCTTTCGTCGAGTTTTCTGAGCATCAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTGTGAATCGCCCGATCGTAGAATTCGCTGTAGACAATGTTCAGATGTTGAAGCTACGGAAAGCGAAGTTACAAGCTTCGTATCAGGACAATACTGCCAACGTTCCGAAATCACTGCATCGTAATGCCGATACAAATGCTGGGGATATCCATTCAAACAAGACGAACTCCAGAAAAAGGAAAGCAACAGGCGATAATCGTCCAGTGAAGGAGAAAAATCGCAACGAAAACAAAAATGGCAATCATGTATCCAATGATATGGCGATGGAAGAAAGTAGAGACAGAAAAAAGAGGAAAATGCGTCCAGAAAGTGGTAACAATACAAACGAGTCACAGAAACAAAAACCAGAAGGACGAAGATCAATGCCTGAAAAATCGAGCAAGAGATCGGCACCCATGGATACTGTGAAAATAAAAGCTTCCCAGGAAGCAGATGTACAACACAAAAAGAAGGCAAAACATCAGGTAGACCAGCAGCAGAGGAAGAGGGCAAAGAAAAACAAGTTACCAGTAGGACAGGACGCCGTTGATAAGCTCGATAAACTTATCGAACAATATCGATCTAAGTTCTCGCAGAAGAGTTCGGATCCAGCTGATGGTGAAAAGAAAGGCTCTAAACAGGTTAGAAGATGGTTCCAATCATAA 2958 42.02 MGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTAFKSKTNKEGDTSEREEQTTNEDGDTSKREEQTTNEDGDTSEKEEQTTNEDGDVSKREEQTTLNSEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGAVCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQLGGEGSKTQKWKLIVRNLPFQAKEKQIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETEKDREGSISSDDLEVENAAVHNKSQRSDEDEGSSEDSEKEDISSEIDFEGEAEISRKILENLIASSAKEALPSLIDGNPPSKVNKEPVLDSSKKSSDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIGNLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVASGVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNVDHRNLNLAQEGIILEGTPAAEGVSASDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGDNRPVKEKNRNENKNGNHVSNDMAMEESRDRKKRKMRPESGNNTNESQKQKPEGRRSMPEKSSKRSAPMDTVKIKASQEADVQHKKKAKHQVDQQQRKRAKKNKLPVGQDAVDKLDKLIEQYRSKFSQKSSDPADGEKKGSKQVRRWFQS 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6369847 6379323 + Cp4.1LG15g05540.1 Cpe15g00552 482010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00552 985 MobiDBLite consensus disorder prediction 101 115 - -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 858 875 - -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 480 522 - -
Cpe15g00552 985 SUPERFAMILY RNA-binding domain, RBD 23 296 IPR035979 GO:0003676
Cpe15g00552 985 MobiDBLite consensus disorder prediction 824 850 - -
Cpe15g00552 985 CDD RRM2_RBM28_like 311 387 - -
Cpe15g00552 985 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 94 IPR000504 GO:0003723
Cpe15g00552 985 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 381 IPR000504 GO:0003723
Cpe15g00552 985 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 537 597 IPR000504 GO:0003723
Cpe15g00552 985 MobiDBLite consensus disorder prediction 884 903 - -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 403 440 - -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 933 958 - -
Cpe15g00552 985 Gene3D - 484 632 IPR012677 -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 495 515 - -
Cpe15g00552 985 Coils Coil 920 940 - -
Cpe15g00552 985 SUPERFAMILY RNA-binding domain, RBD 526 621 IPR035979 GO:0003676
Cpe15g00552 985 SUPERFAMILY RNA-binding domain, RBD 306 395 IPR035979 GO:0003676
Cpe15g00552 985 MobiDBLite consensus disorder prediction 801 985 - -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 1 20 - -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 1 15 - -
Cpe15g00552 985 CDD RRM3_RBM28_like 535 616 - -
Cpe15g00552 985 CDD RRM4_RBM28_like 687 784 - -
Cpe15g00552 985 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Cpe15g00552 985 SMART rrm1_1 688 780 IPR000504 GO:0003723
Cpe15g00552 985 SMART rrm1_1 536 614 IPR000504 GO:0003723
Cpe15g00552 985 SMART rrm1_1 311 384 IPR000504 GO:0003723
Cpe15g00552 985 SMART rrm1_1 24 97 IPR000504 GO:0003723
Cpe15g00552 985 PANTHER RNA BINDING PROTEIN 5 432 - -
Cpe15g00552 985 PANTHER RNA BINDING PROTEIN 527 796 - -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 394 455 - -
Cpe15g00552 985 Gene3D - 297 443 IPR012677 -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 801 823 - -
Cpe15g00552 985 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 5 432 - -
Cpe15g00552 985 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 527 796 - -
Cpe15g00552 985 SUPERFAMILY RNA-binding domain, RBD 678 783 IPR035979 GO:0003676
Cpe15g00552 985 MobiDBLite consensus disorder prediction 123 191 - -
Cpe15g00552 985 CDD RRM1_RBM28_like 25 102 - -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 441 455 - -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 101 210 - -
Cpe15g00552 985 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 687 800 IPR000504 GO:0003723
Cpe15g00552 985 Gene3D - 16 152 IPR012677 -
Cpe15g00552 985 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Cpe15g00552 985 Gene3D - 686 781 IPR012677 -
Cpe15g00552 985 MobiDBLite consensus disorder prediction 965 979 - -
Cpe15g00552 985 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 535 618 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00552 K14573 NOP4, RBM28; nucleolar protein 4 - csv:101217384 1496.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00552 Cpe-Chr15:6369847 Cpe03g00318 Cpe-Chr3:1666734 2.49E-09 dispersed
Cpe15g00552 Cpe-Chr15:6369847 Cpe11g00435 Cpe-Chr11:2459410 2.51E-09 transposed
Cpe15g00552 Cpe-Chr15:6369847 Cpe01g02142 Cpe-Chr1:18036128 1.01E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g6 . . . Bda08g00947 . . Bma05g00433 . . . . . . . . . Cpe15g00552 . . . . . . . . . . . . . . . . Cone3ag1223 Cone10ag1108 . Csa07g00016 . Cme01g01366 . . . . . Bpe05g00327 . . . . . . . . Car19g00524 . . . . . . . . . . . . . . . . Lsi11g01124 . Chy01g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00552 Cpe_Chr15 FPKM 9.546353 9.770358 13.531402 15.08215 6.261016 11.194601 7.343777 12.865587 13.373945 12.252766